Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G319200.1 | Wheat | nucleus | 93.7 | 93.7 |
| TraesCS3A01G325800.1 | Wheat | nucleus | 93.12 | 93.12 |
| HORVU3Hr1G077690.1 | Barley | nucleus | 83.46 | 84.95 |
| Os01t0788800-01 | Rice | nucleus | 46.27 | 50.24 |
| Zm00001d043231_P001 | Maize | nucleus | 51.24 | 44.19 |
| EES01587 | Sorghum | nucleus | 48.76 | 43.82 |
| GSMUA_Achr7P00210_001 | Banana | nucleus | 29.58 | 29.75 |
| TraesCS2B01G497500.1 | Wheat | nucleus | 32.65 | 28.77 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 28.99 | 28.41 |
| TraesCS7B01G208600.1 | Wheat | nucleus | 32.94 | 28.2 |
| TraesCS6B01G269700.1 | Wheat | nucleus | 30.75 | 26.12 |
| TraesCS7B01G072800.1 | Wheat | nucleus | 5.56 | 25.85 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 26.5 | 24.79 |
| TraesCS2B01G419200.1 | Wheat | nucleus | 28.4 | 24.71 |
| TraesCS3B01G331200.1 | Wheat | nucleus | 26.94 | 24.37 |
| TraesCS5B01G315100.2 | Wheat | nucleus | 30.01 | 24.12 |
| TraesCS1B01G045500.1 | Wheat | nucleus | 7.03 | 22.02 |
| TraesCS4B01G227900.1 | Wheat | nucleus | 7.17 | 21.97 |
| TraesCS3B01G138400.1 | Wheat | nucleus | 6.88 | 21.86 |
| TraesCS5B01G330300.1 | Wheat | nucleus | 24.01 | 21.84 |
| TraesCS3B01G138600.1 | Wheat | nucleus | 6.44 | 20.47 |
| TraesCS4B01G084700.16 | Wheat | extracellular, golgi | 23.72 | 19.98 |
| TraesCS1B01G208400.1 | Wheat | nucleus | 25.92 | 19.89 |
| TraesCS3B01G138800.1 | Wheat | nucleus | 5.27 | 19.05 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF343 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS3B01G354900 | EnsemblPlants:TraesCS3B01G354900.1 | TIGR:cd00086 | TIGR:cd08875 |
| TIGR:cd14686 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:565265645..565270023
Molecular Weight (calculated)
74626.2 Da
IEP (calculated)
8.029
GRAVY (calculated)
-0.315
Length
683 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGNRGGRRR KAPQQGRRAR DNDLDISQSN SDGQDGAEGS QQPKRRLQRL NPQQTQVLEG FFGICAHPDE NQRMGMSEST GLTMQQVKFW FQNKRTHMKH
101: VTGKEETYRM KAQNEMLREE NKRLASAAKT AFCPACVALP GLNPSVEVQR LRQENESLKQ QLSQLRAEAH PSSSRPFQLD PSTENIIGRE NDMDAIAELA
201: QSAMHEFVVL SESGGPLWMP VPGGSLDVLN KMAYAQTFGA GSSANAIGFM TEATRADGMV MMDAKQIVDY IMDSECYTSF CPGLVTSANT TKVYKWPTSA
301: GYNGAMHLMT VETVFPSPLV PSRKCTFVRC CRDMQNGTVI IVDVSLDNGD GTFKCHKMPS GILIRSLNSD ASQVTVVEHV QVNDTGVHEL YRPSLSGLMF
401: GARRWVSSIV RQSARMRDLF IVSKSASNGN TNGRKTLMKI ADGLLADYAS GVAAVPGSGW TILHGAGTED DIRITYRKNN DDSNNAVVSV CASFHLPVPL
501: KVTFDLLKNN LLRPKWDVLV NGNSVREEVA VCKGVGAGID DVVSILHLKD PPTGENRDNI MILQNSGYDV SGAFMVYCPV NIQVMNEIMS PSNTAESNNV
601: SLYPTGFHLL PVEDTALGLG EGGATLVTAG FQIMLKLARG TGLYPRSAST AAGLMTENIA TIKKTLTSSH PIFYRRQPPN NLI
101: VTGKEETYRM KAQNEMLREE NKRLASAAKT AFCPACVALP GLNPSVEVQR LRQENESLKQ QLSQLRAEAH PSSSRPFQLD PSTENIIGRE NDMDAIAELA
201: QSAMHEFVVL SESGGPLWMP VPGGSLDVLN KMAYAQTFGA GSSANAIGFM TEATRADGMV MMDAKQIVDY IMDSECYTSF CPGLVTSANT TKVYKWPTSA
301: GYNGAMHLMT VETVFPSPLV PSRKCTFVRC CRDMQNGTVI IVDVSLDNGD GTFKCHKMPS GILIRSLNSD ASQVTVVEHV QVNDTGVHEL YRPSLSGLMF
401: GARRWVSSIV RQSARMRDLF IVSKSASNGN TNGRKTLMKI ADGLLADYAS GVAAVPGSGW TILHGAGTED DIRITYRKNN DDSNNAVVSV CASFHLPVPL
501: KVTFDLLKNN LLRPKWDVLV NGNSVREEVA VCKGVGAGID DVVSILHLKD PPTGENRDNI MILQNSGYDV SGAFMVYCPV NIQVMNEIMS PSNTAESNNV
601: SLYPTGFHLL PVEDTALGLG EGGATLVTAG FQIMLKLARG TGLYPRSAST AAGLMTENIA TIKKTLTSSH PIFYRRQPPN NLI
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.