Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P23090_001 | Banana | endoplasmic reticulum, plasma membrane | 53.9 | 55.45 |
| GSMUA_Achr8P07310_001 | Banana | mitochondrion, nucleus | 55.52 | 51.93 |
| GSMUA_Achr10P... | Banana | nucleus | 52.72 | 50.07 |
| GSMUA_Achr11P... | Banana | plastid | 55.52 | 47.78 |
| GSMUA_Achr1P18760_001 | Banana | nucleus | 44.92 | 40.34 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 35.35 | 39.8 |
| GSMUA_Achr11P... | Banana | nucleus | 43.59 | 39.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.92 | 39.66 |
| GSMUA_Achr10P... | Banana | nucleus | 41.38 | 39.52 |
| GSMUA_Achr11P... | Banana | nucleus | 44.62 | 39.05 |
| GSMUA_Achr5P20050_001 | Banana | nucleus | 45.51 | 38.87 |
| GSMUA_Achr10P... | Banana | nucleus | 38.59 | 38.42 |
| GSMUA_Achr5P10510_001 | Banana | nucleus | 44.92 | 38.36 |
| GSMUA_Achr3P12410_001 | Banana | nucleus | 41.83 | 38.27 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 40.94 | 37.62 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 40.06 | 36.96 |
| GSMUA_Achr5P14100_001 | Banana | nucleus | 40.21 | 36.11 |
| GSMUA_Achr3P15400_001 | Banana | nucleus | 38.44 | 34.85 |
| GSMUA_Achr4P19010_001 | Banana | nucleus | 40.94 | 34.71 |
| GSMUA_Achr8P27340_001 | Banana | nucleus | 36.08 | 32.71 |
| Os01t0788800-01 | Rice | nucleus | 29.01 | 31.32 |
| TraesCS3B01G354900.1 | Wheat | nucleus | 29.75 | 29.58 |
| HORVU3Hr1G077690.1 | Barley | nucleus | 29.16 | 29.51 |
| TraesCS3D01G319200.1 | Wheat | nucleus | 29.31 | 29.14 |
| TraesCS3A01G325800.1 | Wheat | nucleus | 29.01 | 28.84 |
| EES01587 | Sorghum | nucleus | 30.78 | 27.5 |
| Zm00001d043231_P001 | Maize | nucleus | 30.78 | 26.39 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008289 |
| EnsemblPlantsGene:GSMUA_Achr7G00210_001 | EnsemblPlants:GSMUA_Achr7P00210_001 | EnsemblPlants:GSMUA_Achr7T00210_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR002913 | UniProt:M0TDG1 | PFAM:PF00046 | PFAM:PF01852 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF320 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START_lipid-bd_dom | UniParc:UPI000294D18A | SEG:seg | : | : | : |
Description
Homeobox-leucine zipper protein ROC2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G00210_001]
Coordinates
chr7:+:204883..208547
Molecular Weight (calculated)
75181.5 Da
IEP (calculated)
5.631
GRAVY (calculated)
-0.298
Length
679 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQLIPDVDE DFANTPGSEP TEGASEDELQ DHGSRGKRKR HHRHTPDQIQ RLEAFFKECP HPDDRQRNEL GRELGLEPLQ VKFWFQNKRT QIKNQSEREE
101: NQRLKDENDR LLSENLRLKE ALTGACCPNC GGPPHLGEMS IDEQELQAEN ARLQDEIGRI SAIVAKYAEP DMTLNDSSRG GEVVFRPHDR RTEMGRRTAL
201: ALAQVAAEEL LAISQLGEPI WTWGYDGFRE TLNQEEYARA FPGGLGPKME GLRTEASRET AVVRMHTGRL VDILMDVSKW SVFFSSIVTR ATTVEIITII
301: ITILFIGYVH SQMAAELQVP TPLVPLRESL FLRYCKRHDG LWVVVDVSME VRLNPMARYR RRPSGCVIQQ LPNDYSKVVW IEHVEVDDSG VHDMFKSMVN
401: SCLAFGAKRW VSTMTRQCER LACLLATNSS SADIAANPDG TRNILKLAER MVVSFCSGVS GSVAHHWTNI SGNVADHVRI RSRNNDGDPG RPPGVVLNAS
501: TSIWLPITPK RVFELLRSES LRNEWDILLK GGMIHEAACI ANGQQGGNCV SIYTVGLPEE ETTNMMILQE SCSDPTCSYV IYAPVDAAAI AAVLSGGDPN
601: HVALLPSGFA ILPDRPSSAV DHDGETDLGG GSLLTVAFQI LVFSGPGSKI SRGFIATVDG LLSCTCDRIR TILSGNSVR
101: NQRLKDENDR LLSENLRLKE ALTGACCPNC GGPPHLGEMS IDEQELQAEN ARLQDEIGRI SAIVAKYAEP DMTLNDSSRG GEVVFRPHDR RTEMGRRTAL
201: ALAQVAAEEL LAISQLGEPI WTWGYDGFRE TLNQEEYARA FPGGLGPKME GLRTEASRET AVVRMHTGRL VDILMDVSKW SVFFSSIVTR ATTVEIITII
301: ITILFIGYVH SQMAAELQVP TPLVPLRESL FLRYCKRHDG LWVVVDVSME VRLNPMARYR RRPSGCVIQQ LPNDYSKVVW IEHVEVDDSG VHDMFKSMVN
401: SCLAFGAKRW VSTMTRQCER LACLLATNSS SADIAANPDG TRNILKLAER MVVSFCSGVS GSVAHHWTNI SGNVADHVRI RSRNNDGDPG RPPGVVLNAS
501: TSIWLPITPK RVFELLRSES LRNEWDILLK GGMIHEAACI ANGQQGGNCV SIYTVGLPEE ETTNMMILQE SCSDPTCSYV IYAPVDAAAI AAVLSGGDPN
601: HVALLPSGFA ILPDRPSSAV DHDGETDLGG GSLLTVAFQI LVFSGPGSKI SRGFIATVDG LLSCTCDRIR TILSGNSVR
001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA
Arabidopsis Description
PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.