Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G319200.1 | Wheat | nucleus | 94.73 | 94.73 |
| TraesCS3B01G354900.1 | Wheat | nucleus | 93.12 | 93.12 |
| HORVU3Hr1G077690.1 | Barley | nucleus | 82.28 | 83.76 |
| Os01t0788800-01 | Rice | nucleus | 46.41 | 50.4 |
| Zm00001d043231_P001 | Maize | nucleus | 51.39 | 44.32 |
| EES01587 | Sorghum | nucleus | 48.61 | 43.68 |
| GSMUA_Achr7P00210_001 | Banana | nucleus | 28.84 | 29.01 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 28.55 | 28.47 |
| TraesCS2A01G474000.1 | Wheat | nucleus | 31.63 | 27.8 |
| TraesCS7A01G308400.1 | Wheat | nucleus | 31.92 | 27.39 |
| TraesCS7A01G168100.1 | Wheat | nucleus | 5.71 | 26.53 |
| TraesCS6A01G255800.1 | Wheat | nucleus | 30.16 | 25.62 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 26.21 | 24.69 |
| TraesCS7A01G168000.1 | Wheat | nucleus | 4.83 | 24.26 |
| TraesCS2A01G401200.3 | Wheat | nucleus | 28.26 | 24.12 |
| TraesCS5A01G314400.2 | Wheat | nucleus | 29.87 | 24.03 |
| TraesCS3A01G305300.1 | Wheat | nucleus | 26.35 | 23.65 |
| TraesCS7A01G215300.1 | Wheat | nucleus | 5.86 | 23.39 |
| TraesCS4A01G072000.1 | Wheat | nucleus | 7.17 | 21.97 |
| TraesCS5A01G330200.1 | Wheat | nucleus | 22.99 | 21.1 |
| TraesCS3A01G119200.1 | Wheat | nucleus | 5.56 | 20.99 |
| TraesCS1A01G193400.1 | Wheat | nucleus, plastid | 26.5 | 20.73 |
| TraesCS7A01G215400.1 | Wheat | nucleus | 5.42 | 20.67 |
| TraesCS4A01G231300.2 | Wheat | nucleus | 22.84 | 20.21 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF343 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS3A01G325800 | EnsemblPlants:TraesCS3A01G325800.1 | TIGR:cd00086 | TIGR:cd08875 |
| TIGR:cd14686 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:571174922..571179414
Molecular Weight (calculated)
74864.6 Da
IEP (calculated)
7.874
GRAVY (calculated)
-0.314
Length
683 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGNHGGRRR KAPQQDRPAR DNDLDISQGN SDGQDGAEGS QPKRRLQRLT PQQTQVLEGF FGICAHPDEN QRMGMSESTG LTMQQVKFWF QNKRTHMKHV
101: TGKEETYRMK AQNEMLREEN KRLASAAKTS FCPSCVALPG LSPSGEVQRL RQENEQLKQQ LSQLRAEAHP SSSRPFQLDP SMENITGREN DMDAIAELAQ
201: SAMHEFVVLA EAGGPLWMPV PGGSFDVLNK MAYAQTFGAR SSANVILGFM TEATRADDMV MMDAKQIVDY IMDSECYTSF CPGLLTSANT TKIYKWPTSA
301: GYNGAMHLVT VETVFPSPLV PSRKCTFVRC CRDMQNGTVI IVDVSLDNGD GTVKCHKMPS GVLVRSLNSD ASQVTVIEHV QVNDTGLHEL YRPSLSGLMF
401: GARRWVSSIV RQSARMRDLF VVSKSASNGN TNGRKTLMKI ADGLLAGYAS GIAAVPGGGW TILRGAGTED DIRISYRRNN DDSNTAIVSV CASFHLPVPH
501: RVTFDLLKNN LLRPKWDVLV NGNSVREEVA VCKGVGGGID DVVSILHLKD PPTGENRDNI MILQNSSYDV SGAFMVYCPV NIQLMNEIMS PSDTAESNKV
601: SLYPTGFYLL PVEDTALGLG EGGATLVTVG FQIMLKLARG TGLYPRSAST AVGLMTENIA TIKKTLTSSH PIFYRRQPPN NFI
101: TGKEETYRMK AQNEMLREEN KRLASAAKTS FCPSCVALPG LSPSGEVQRL RQENEQLKQQ LSQLRAEAHP SSSRPFQLDP SMENITGREN DMDAIAELAQ
201: SAMHEFVVLA EAGGPLWMPV PGGSFDVLNK MAYAQTFGAR SSANVILGFM TEATRADDMV MMDAKQIVDY IMDSECYTSF CPGLLTSANT TKIYKWPTSA
301: GYNGAMHLVT VETVFPSPLV PSRKCTFVRC CRDMQNGTVI IVDVSLDNGD GTVKCHKMPS GVLVRSLNSD ASQVTVIEHV QVNDTGLHEL YRPSLSGLMF
401: GARRWVSSIV RQSARMRDLF VVSKSASNGN TNGRKTLMKI ADGLLAGYAS GIAAVPGGGW TILRGAGTED DIRISYRRNN DDSNTAIVSV CASFHLPVPH
501: RVTFDLLKNN LLRPKWDVLV NGNSVREEVA VCKGVGGGID DVVSILHLKD PPTGENRDNI MILQNSSYDV SGAFMVYCPV NIQLMNEIMS PSDTAESNKV
601: SLYPTGFYLL PVEDTALGLG EGGATLVTVG FQIMLKLARG TGLYPRSAST AVGLMTENIA TIKKTLTSSH PIFYRRQPPN NFI
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.