Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G335900.1 | Wheat | nucleus | 90.19 | 89.11 |
| TraesCS5B01G330300.1 | Wheat | nucleus | 87.37 | 86.55 |
| HORVU5Hr1G083940.3 | Barley | nucleus | 75.13 | 72.04 |
| Zm00001d019477_P001 | Maize | nucleus | 37.1 | 37.5 |
| EER98409 | Sorghum | nucleus | 34.54 | 35.21 |
| Zm00001d004234_P001 | Maize | nucleus | 33.33 | 35.08 |
| OQU81266 | Sorghum | nucleus | 35.35 | 34.2 |
| TraesCS4A01G231300.2 | Wheat | nucleus | 35.08 | 33.81 |
| OQU81174 | Sorghum | nucleus | 32.53 | 32.79 |
| TraesCS7A01G215400.1 | Wheat | nucleus | 7.53 | 31.28 |
| TraesCS3A01G119200.1 | Wheat | nucleus | 7.39 | 30.39 |
| TraesCS5A01G314400.2 | Wheat | nucleus | 33.74 | 29.56 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 27.15 | 29.49 |
| TraesCS7A01G168000.1 | Wheat | nucleus | 5.38 | 29.41 |
| TraesCS7A01G215300.1 | Wheat | nucleus | 6.72 | 29.24 |
| TraesCS4A01G072000.1 | Wheat | nucleus | 8.47 | 28.25 |
| Zm00001d004230_P030 | Maize | nucleus | 30.78 | 28.13 |
| TraesCS6A01G255800.1 | Wheat | nucleus | 30.38 | 28.11 |
| TraesCS7A01G168100.1 | Wheat | nucleus | 5.51 | 27.89 |
| TraesCS2A01G474000.1 | Wheat | nucleus | 28.49 | 27.28 |
| TraesCS7A01G308400.1 | Wheat | nucleus | 29.17 | 27.26 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 25.4 | 26.07 |
| TraesCS2A01G401200.3 | Wheat | nucleus | 27.96 | 26.0 |
| TraesCS3A01G305300.1 | Wheat | nucleus | 26.48 | 25.89 |
| Os08t0292000-01 | Rice | nucleus | 27.42 | 25.79 |
| TraesCS3A01G325800.1 | Wheat | nucleus | 21.1 | 22.99 |
| TraesCS1A01G193400.1 | Wheat | nucleus, plastid | 24.73 | 21.08 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0008289 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| PFAM:PF00046 | PFAM:PF01852 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF484 |
| SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS5A01G330200 |
| EnsemblPlants:TraesCS5A01G330200.1 | TIGR:cd00086 | TIGR:cd08875 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5A:-:539504162..539509761
Molecular Weight (calculated)
80688.7 Da
IEP (calculated)
6.538
GRAVY (calculated)
-0.305
Length
744 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGEWPEQYN DLYNWLGLGY PGGDNQVIQH NLGAEVNGLP GAAANMGNNT NAAAADQGNG GGQANGDQTA GTRERHFRRR HTVEQIQILE AAFKEGHHPD
101: EKRRLELSRR TGLSPAQSKA QKKETEEFQQ ENDRLQAEKQ ALMSAMQNKI CIICRGEDTP ERQRLYAENM MLKDAHMRIA DFLKNVSGGR LQVINHTVVD
201: THAPLTLTGP NPVTIPDHGI ARDNPEADGN ALAIQHVACA MEELKVLVGL GAPVWSLAEG GEVEVINYKE YLKMMFPNEH HEMEFGADGT RKTGIISCTA
301: TDLVGILMNA DWWSQTFPGI VASATTSKVI TPGDSGDGMV QLMNAELRVL SPRVPVRKIN FIRHCQKIAE NIWAVVDVSV DGIRDQAAGL NDGAPSTYTA
401: CKLQPSGCHI QELSNGHCQV TWIVNMVHDE ATVPPLHHPL FRSGWALGAC RWIASLQRRC EYIASLHTNP VHTLNNRSGG AAAITAEGRK NVLEVAHRMT
501: LKFYEAICGP GSQPGRSVDE RRGSCGVGTE RYEVAVRVVT FPVGRGVAVL RATTTVWLPR TPAQRVFNYL CDADRRTEWD ISAKRTSTIR QEGCFSTGEV
601: HGNSVSLLRT IASNGAYGKL ILQESSIDAS CMVLAYAPID DQSVEEVMNG TNISFSLLPS GVVVLPDGNA EPGAPPTSAM CSSSSSSSHK SNSGSLVSTM
701: YQTLLSGQPP EHLFKAVAEN VGNLLCQAID KIKSGVHANV VLSA
101: EKRRLELSRR TGLSPAQSKA QKKETEEFQQ ENDRLQAEKQ ALMSAMQNKI CIICRGEDTP ERQRLYAENM MLKDAHMRIA DFLKNVSGGR LQVINHTVVD
201: THAPLTLTGP NPVTIPDHGI ARDNPEADGN ALAIQHVACA MEELKVLVGL GAPVWSLAEG GEVEVINYKE YLKMMFPNEH HEMEFGADGT RKTGIISCTA
301: TDLVGILMNA DWWSQTFPGI VASATTSKVI TPGDSGDGMV QLMNAELRVL SPRVPVRKIN FIRHCQKIAE NIWAVVDVSV DGIRDQAAGL NDGAPSTYTA
401: CKLQPSGCHI QELSNGHCQV TWIVNMVHDE ATVPPLHHPL FRSGWALGAC RWIASLQRRC EYIASLHTNP VHTLNNRSGG AAAITAEGRK NVLEVAHRMT
501: LKFYEAICGP GSQPGRSVDE RRGSCGVGTE RYEVAVRVVT FPVGRGVAVL RATTTVWLPR TPAQRVFNYL CDADRRTEWD ISAKRTSTIR QEGCFSTGEV
601: HGNSVSLLRT IASNGAYGKL ILQESSIDAS CMVLAYAPID DQSVEEVMNG TNISFSLLPS GVVVLPDGNA EPGAPPTSAM CSSSSSSSHK SNSGSLVSTM
701: YQTLLSGQPP EHLFKAVAEN VGNLLCQAID KIKSGVHANV VLSA
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.