Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004234_P001 | Maize | nucleus | 70.09 | 76.24 |
| OQU81174 | Sorghum | nucleus | 44.6 | 46.48 |
| EER98409 | Sorghum | nucleus | 42.65 | 44.93 |
| TraesCS5D01G335900.1 | Wheat | nucleus | 35.5 | 36.26 |
| TraesCS5B01G330300.1 | Wheat | nucleus | 34.85 | 35.69 |
| TraesCS4A01G231300.2 | Wheat | nucleus | 35.5 | 35.36 |
| TraesCS5A01G330200.1 | Wheat | nucleus | 34.2 | 35.35 |
| HORVU5Hr1G083940.3 | Barley | nucleus | 35.11 | 34.79 |
| TraesCS4D01G082600.1 | Wheat | nucleus | 35.76 | 34.16 |
| TraesCS4B01G084700.16 | Wheat | extracellular, golgi | 35.89 | 34.03 |
| EER99222 | Sorghum | nucleus | 37.84 | 33.37 |
| EES02604 | Sorghum | nucleus | 34.59 | 32.64 |
| EER89393 | Sorghum | nucleus | 28.74 | 31.57 |
| EES05874 | Sorghum | nucleus | 28.61 | 31.12 |
| KXG26935 | Sorghum | nucleus | 31.86 | 30.55 |
| EES11464 | Sorghum | nucleus | 30.82 | 30.04 |
| EES13460 | Sorghum | mitochondrion, nucleus | 30.3 | 29.83 |
| EES14500 | Sorghum | nucleus | 30.82 | 29.12 |
| Os08t0292000-01 | Rice | nucleus | 29.13 | 28.32 |
| OQU87592 | Sorghum | nucleus | 25.23 | 27.29 |
| EES01587 | Sorghum | nucleus | 24.71 | 25.0 |
| KXG38837 | Sorghum | nucleus | 26.01 | 22.68 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | UniProt:A0A1Z5RD06 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | EnsemblPlants:OQU81266 | ProteinID:OQU81266 | ProteinID:OQU81266.1 | PFAM:PF00046 |
| PFAM:PF01852 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF484 | SMART:SM00234 | SMART:SM00389 | EnsemblPlantsGene:SORBI_3006G034900 | SUPFAM:SSF46689 | SUPFAM:SSF55961 |
| InterPro:START_lipid-bd_dom | UniParc:UPI000B8BB15F | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:10292136..10297960
Molecular Weight (calculated)
84720.5 Da
IEP (calculated)
5.114
GRAVY (calculated)
-0.244
Length
769 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIMDNGGQL NNNSNEQDND GFTMDEIPDL PWNSHMEYDV DAFLGAEDHV NTNQTTDDVD HRSPVGETPS KGVKRFAMHQ IQELEAQFRV CSHPNPDVRQ
101: ELATKIGLEE RQVKFWFQNR RSQMKVKAYG DDNKGIRQEL AKLKAENEEL KQRRQNPICF MCTNPIAAIQ SENWRLLNDN TRLKDEYVRS KAHMDRLIRE
201: AAAEHPPSAM RSSDHHLASA HMNMDPVALT GNCRTTTNLE ATLTSHAARA MKEFVMLATK GEPMWVLAKD GEKLNHQEYI LQTFPGLLGL CPQGFVEEAT
301: RETDMIKGTA MDLVSILTDV NQWSQMFPSM VAYVSSSNVI SSGSFSLHDG LIQLMNVELW VQSPRLLNRS VKFLRFSKMM ANGRWAVVDV SVDGIYGVEQ
401: EGSSTSYTTG CRLLPSGCLL EDMSGGYCKV TWVVHAEYDE TTVPFLFRPL LQSGQALGAC RWLRSLQKQC EYITVLPSSH VLPSSSSSSA ISTLGVGRRS
501: VMELAGQMMV SFYAAVSGPV IVPATSSVNE WRLVSNGNGT ERVEAFVRLV TWNCADIMPG EPSVTVLSAT TTVWLPGTPP LCVFEYLCDL QRRGEWDTHV
601: DAGEVKELSS VATSPQLPGN NVVSVLEPTT VVTDETESSK VLILQETSTD VSCFLVVYSL IEESLMRGIM DGRERSNIFV LPSGFAILPD GHGKAHADHT
701: AANSSNSAPI DSRNNNAGSI VSVAFQTLLP GNLSSNLDNT GAFEDARLQV CHAITKIKAA VGASNIIPA
101: ELATKIGLEE RQVKFWFQNR RSQMKVKAYG DDNKGIRQEL AKLKAENEEL KQRRQNPICF MCTNPIAAIQ SENWRLLNDN TRLKDEYVRS KAHMDRLIRE
201: AAAEHPPSAM RSSDHHLASA HMNMDPVALT GNCRTTTNLE ATLTSHAARA MKEFVMLATK GEPMWVLAKD GEKLNHQEYI LQTFPGLLGL CPQGFVEEAT
301: RETDMIKGTA MDLVSILTDV NQWSQMFPSM VAYVSSSNVI SSGSFSLHDG LIQLMNVELW VQSPRLLNRS VKFLRFSKMM ANGRWAVVDV SVDGIYGVEQ
401: EGSSTSYTTG CRLLPSGCLL EDMSGGYCKV TWVVHAEYDE TTVPFLFRPL LQSGQALGAC RWLRSLQKQC EYITVLPSSH VLPSSSSSSA ISTLGVGRRS
501: VMELAGQMMV SFYAAVSGPV IVPATSSVNE WRLVSNGNGT ERVEAFVRLV TWNCADIMPG EPSVTVLSAT TTVWLPGTPP LCVFEYLCDL QRRGEWDTHV
601: DAGEVKELSS VATSPQLPGN NVVSVLEPTT VVTDETESSK VLILQETSTD VSCFLVVYSL IEESLMRGIM DGRERSNIFV LPSGFAILPD GHGKAHADHT
701: AANSSNSAPI DSRNNNAGSI VSVAFQTLLP GNLSSNLDNT GAFEDARLQV CHAITKIKAA VGASNIIPA
001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A
Arabidopsis Description
HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.