Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G082600.1 | Wheat | nucleus | 89.12 | 85.47 |
| TraesCS4B01G084700.16 | Wheat | extracellular, golgi | 87.05 | 82.86 |
| Zm00001d019477_P001 | Maize | nucleus | 34.84 | 36.55 |
| EER98409 | Sorghum | nucleus | 34.2 | 36.16 |
| Zm00001d004234_P001 | Maize | nucleus | 32.64 | 35.64 |
| OQU81266 | Sorghum | nucleus | 35.36 | 35.5 |
| TraesCS5A01G330200.1 | Wheat | nucleus | 33.81 | 35.08 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 29.66 | 33.43 |
| TraesCS7A01G168100.1 | Wheat | nucleus | 6.09 | 31.97 |
| OQU81174 | Sorghum | nucleus | 30.05 | 31.44 |
| TraesCS5A01G314400.2 | Wheat | nucleus | 33.16 | 30.15 |
| TraesCS6A01G255800.1 | Wheat | nucleus | 30.57 | 29.35 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 27.46 | 29.24 |
| TraesCS7A01G308400.1 | Wheat | nucleus | 29.15 | 28.27 |
| TraesCS2A01G401200.3 | Wheat | nucleus | 29.15 | 28.12 |
| TraesCS7A01G215300.1 | Wheat | nucleus | 6.22 | 28.07 |
| TraesCS2A01G474000.1 | Wheat | nucleus | 28.24 | 28.06 |
| Zm00001d004230_P030 | Maize | nucleus | 29.53 | 28.01 |
| TraesCS7A01G215400.1 | Wheat | nucleus | 6.48 | 27.93 |
| TraesCS4A01G072000.1 | Wheat | nucleus | 7.9 | 27.35 |
| TraesCS7A01G168000.1 | Wheat | nucleus | 4.79 | 27.21 |
| TraesCS3A01G119200.1 | Wheat | nucleus | 6.35 | 27.07 |
| Os08t0292000-01 | Rice | nucleus | 26.68 | 26.04 |
| TraesCS3A01G305300.1 | Wheat | nucleus | 24.22 | 24.57 |
| TraesCS3A01G325800.1 | Wheat | nucleus | 20.21 | 22.84 |
| TraesCS1A01G193400.1 | Wheat | nucleus, plastid | 25.0 | 22.11 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0008289 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 |
| PFAM:PF01852 | PFscan:PS50071 | PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF484 | SMART:SM00389 |
| SUPFAM:SSF46689 | SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS4A01G231300 | EnsemblPlants:TraesCS4A01G231300.2 | TIGR:cd00086 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:540600328..540604473
Molecular Weight (calculated)
83889.2 Da
IEP (calculated)
7.316
GRAVY (calculated)
-0.230
Length
772 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSSNVVLAS KEKNCPPKVA MVGEWKPQNG QVHDEIDPRI PTDNKDFIRS NTGTMDDDDD VATADEAITG AGSASNTRKR GRHANRQIRE LEAMFQHCPH
101: PDESLRMALG EKVGMDPLRV KFWFQNRRNA KKNQNERQQN MVLRTENLML AEENRAMKAA MLKKTCPTCK GPMVFIKPLA PPELLRLHME NERLKADLLR
201: RTAYLHGVSA GTAGPSRILC DLNVDPVAPL PPRQDDLMAD TVGHCAPGGC ASAAGSGPEH AALERHVLAA LNELMMLMKQ GEPMWQPAAL GGEVLDHQLY
301: RATTVPGLLE LPPPGFTANG TRDTGMVMCT GTDLVRIFMD ENCWLETFPD IVSSVSASNI GRGCICQGGV ILLNAGLRVL SPGVSSCTVK FARQCQMIEQ
401: GIWAVVDVSL DAHGTSELRA WDTGLPGDCR VLPSGCLIKD MNNGYCKVAM IVNAEYDKGF MPAPLHPLLR SGHTFSARRW LTSLQRRCEF LAQRLSPAYG
501: ISRAGGAITP EGRNNVLELA RRMTESFYAA ISAPRGEAWR KIADWRGRDE SFQLGMHVVT TLAAPGEQAA GPVLCATTTV WLPEAPPQRV FDYICDVERR
601: GEWDVLLAEG ARVQEDASHA TAQFPLGGVS ILRPAVMGRG RGRASCNKKL ILQQACGDAP CMVVAYAPID AGELKDVMHG GSRASLPLPP SGFAILPDGV
701: GDMQIDPLDA NPSAADPIDH QKNRGSLVSV LWQTRLIGGN LTAQTVDNVG NNVYGSIMKI KDAVHAKRVI TV
101: PDESLRMALG EKVGMDPLRV KFWFQNRRNA KKNQNERQQN MVLRTENLML AEENRAMKAA MLKKTCPTCK GPMVFIKPLA PPELLRLHME NERLKADLLR
201: RTAYLHGVSA GTAGPSRILC DLNVDPVAPL PPRQDDLMAD TVGHCAPGGC ASAAGSGPEH AALERHVLAA LNELMMLMKQ GEPMWQPAAL GGEVLDHQLY
301: RATTVPGLLE LPPPGFTANG TRDTGMVMCT GTDLVRIFMD ENCWLETFPD IVSSVSASNI GRGCICQGGV ILLNAGLRVL SPGVSSCTVK FARQCQMIEQ
401: GIWAVVDVSL DAHGTSELRA WDTGLPGDCR VLPSGCLIKD MNNGYCKVAM IVNAEYDKGF MPAPLHPLLR SGHTFSARRW LTSLQRRCEF LAQRLSPAYG
501: ISRAGGAITP EGRNNVLELA RRMTESFYAA ISAPRGEAWR KIADWRGRDE SFQLGMHVVT TLAAPGEQAA GPVLCATTTV WLPEAPPQRV FDYICDVERR
601: GEWDVLLAEG ARVQEDASHA TAQFPLGGVS ILRPAVMGRG RGRASCNKKL ILQQACGDAP CMVVAYAPID AGELKDVMHG GSRASLPLPP SGFAILPDGV
701: GDMQIDPLDA NPSAADPIDH QKNRGSLVSV LWQTRLIGGN LTAQTVDNVG NNVYGSIMKI KDAVHAKRVI TV
001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST
Arabidopsis Description
HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.