Factsheet for TraesCS3A01G305300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G331200.1	Wheat	nucleus	93.56	94.3
HORVU3Hr1G073290.1	Barley	nucleus	77.53	89.94
HORVU0Hr1G006920.1	Barley	nucleus	10.91	83.84
TraesCS3D01G296500.3	Wheat	nucleus	86.47	82.87
Os01t0760800-00	Rice	nucleus	12.22	69.4
VIT_09s0002g04340.t01	Wine grape	nucleus	56.64	57.47
OQU87592	Sorghum	nucleus	52.96	56.68
GSMUA_Achr3P15400_001	Banana	nucleus	55.72	56.61
KRH09884	Soybean	plastid	54.14	54.86
KRH23432	Soybean	plastid	54.93	54.86
KRH47277	Soybean	nucleus	53.75	54.46
GSMUA_Achr8P27340_001	Banana	nucleus	52.69	53.54
KRH44348	Soybean	nucleus	52.17	53.07
PGSC0003DMT400006770	Potato	nucleus	51.91	51.17
Bra003535.1-P	Field mustard	nucleus	50.2	50.93
Solyc03g120620.2.1	Tomato	nucleus	51.77	50.84
CDX79408	Canola	nucleus	50.2	48.97
CDX67929	Canola	nucleus	50.33	48.91
AT1G79840.2	Thale cress	nucleus, plastid	49.67	48.71
TraesCS7A01G168100.1	Wheat	nucleus	7.36	38.1
TraesCS7A01G308400.1	Wheat	nucleus	39.03	37.31
TraesCS2A01G474000.1	Wheat	nucleus	37.98	37.19
TraesCS6A01G324500.1	Wheat	nucleus	33.25	36.93
TraesCS7A01G168000.1	Wheat	nucleus	6.44	36.03
TraesCS6A01G255800.1	Wheat	nucleus	37.71	35.7
TraesCS7A01G167900.1	Wheat	nucleus	31.67	33.24
TraesCS5A01G314400.2	Wheat	nucleus	36.27	32.51
TraesCS2A01G401200.3	Wheat	nucleus	33.77	32.12
TraesCS1A01G193400.1	Wheat	nucleus, plastid	33.9	29.55
TraesCS7A01G215300.1	Wheat	nucleus	6.44	28.66
TraesCS5A01G330200.1	Wheat	nucleus	25.89	26.48
TraesCS4A01G072000.1	Wheat	nucleus	7.75	26.46
TraesCS3A01G325800.1	Wheat	nucleus	23.65	26.35
TraesCS3A01G119200.1	Wheat	nucleus	5.78	24.31
TraesCS4A01G231300.2	Wheat	nucleus	24.57	24.22
TraesCS7A01G215400.1	Wheat	nucleus	5.65	24.02

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009653	GO:GO:0009957	GO:GO:0009987	GO:GO:0010062	GO:GO:0030154
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
InterPro:IPR023393	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF272	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	EnsemblPlantsGene:TraesCS3A01G305300	EnsemblPlants:TraesCS3A01G305300.1	TIGR:cd00086	TIGR:cd08875
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:541243574..541247038

Molecular Weight (calculated)

82158.8 Da

IEP (calculated)

7.565

GRAVY (calculated)

-0.386

Length

761 amino acids

Sequence
(BLAST)

001: MGSGRPRTKD FFAAPTLSLS LAGAFARNAP SGDEVEEGEE GSGGIIGGPP GEEVEISSAD TGPAGSQSGD GSGEEEEGHA DGGKRKKRSR KSYHRHTAEQ
101: VRVMEAVFKE SPHPDEKQRQ QLSKQLGLSP RQVKFWFQNR RTQIKATQER HENSLLKSEL ENLQKENRAM RQLAKGPSRC PSCGAAAAST DGFDAAAANQ
201: EQLLQLENAK LRAEVEKLRG ALGTAAADGA ASPAFSPPFS AATAQMSGNR SPFEVYGAGF VGRNRQSVLE LAGRALEELK TMSSSGEPLW VRSVETGRDI
301: LNYDEYVRLF RRDDGPGDRR ASWSVEASRE TGVVYLDATN LVHAFMDVNQ WKELFPSMVS KASTLDVIRT GDDDDVHDGA VQLMFAEVQM LTPMVPTREF
401: YFARYCKKLA AEKWAVVDVS FDKAEADVGT SPLVTCWKNP SGCIIQEQTN GHSRVTWVEH TRCRECAVPS MYRAVTASGL AFGARRWVAT LQLQCERMVF
501: WVATNVPTRD SNGVSTLAGR RSVLKLAHRM TSSLCRVIGG SRGLAWSRAP RAGAGDVRLT SRTNAGDPGE PQGLIACAVL STWLPVSPTS LLDFLRDESR
601: RPEWDVTLAG RAVQRRVNLT KGKDRCNCVT AYVSSRADEQ GGEWIVQDSC TNPCESIVAY APVDAAVLQP VIRGHDSSGV ALLPCGFAVV PDGLESRPAV
701: ITSRKEDGAM AGAGSLVTVA FQVLASSSPA AALSPESAET VTSLASCTLR RVKKALGCQD R

Best Arabidopsis Sequence Match ( AT1G79840.1 )
(BLAST)

001: MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR
101: KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP
201: DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP
301: QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE
401: KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS
501: LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA
601: HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG
701: SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC

Arabidopsis Description

GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.