CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G331200.1	Wheat	nucleus	56.4	53.11
TraesCS3A01G305300.1	Wheat	nucleus	56.68	52.96
HORVU3Hr1G073290.1	Barley	nucleus	48.38	52.44
HORVU0Hr1G006920.1	Barley	nucleus	7.03	50.51
TraesCS3D01G296500.3	Wheat	nucleus	54.29	48.61
VIT_09s0002g04340.t01	Wine grape	nucleus	48.1	45.6
GSMUA_Achr3P15400_001	Banana	nucleus	47.68	45.26
KRH09884	Soybean	plastid	47.54	45.01
KRH23432	Soybean	plastid	48.1	44.88
KRH47277	Soybean	nucleus	46.98	44.47
GSMUA_Achr8P27340_001	Banana	nucleus	46.27	43.93
KRH44348	Soybean	nucleus	45.57	43.32
Os01t0760800-00	Rice	nucleus	8.16	43.28
PGSC0003DMT400006770	Potato	nucleus	46.13	42.49
Solyc03g120620.2.1	Tomato	nucleus	46.13	42.32
Bra003535.1-P	Field mustard	nucleus	44.16	41.87
CDX67929	Canola	nucleus	44.44	40.36
CDX79408	Canola	nucleus	44.16	40.26
AT1G79840.2	Thale cress	nucleus, plastid	43.88	40.21
EES11464	Sorghum	nucleus	35.87	32.32
EES02604	Sorghum	nucleus	36.29	31.66
EES05874	Sorghum	nucleus	31.08	31.26
EES13460	Sorghum	mitochondrion, nucleus	33.9	30.86
EER89393	Sorghum	nucleus	29.96	30.43
EES14500	Sorghum	nucleus	34.32	29.98
KXG26935	Sorghum	nucleus	33.47	29.68
EER99222	Sorghum	nucleus	35.16	28.67
KXG38837	Sorghum	nucleus	31.79	25.62
OQU81266	Sorghum	nucleus	27.29	25.23
EER98409	Sorghum	nucleus	25.74	25.07
EES01587	Sorghum	nucleus	25.18	23.55
OQU81174	Sorghum	nucleus	23.91	23.04

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	UniProt:A0A1W0VZQ5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009653	GO:GO:0009957	GO:GO:0009987	GO:GO:0010062	GO:GO:0030154	GO:GO:0043565
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	EnsemblPlants:OQU87592
ProteinID:OQU87592	ProteinID:OQU87592.1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF272	SMART:SM00234	SMART:SM00389	EnsemblPlantsGene:SORBI_3003G303500
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0009DC8474	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:63388447..63397543

Molecular Weight (calculated)

78421.5 Da

IEP (calculated)

7.661

GRAVY (calculated)

-0.341

Length

711 amino acids

Sequence
(BLAST)

001: MGSSGRPPPR TPPNIFPADL TLSLSLAGPF GRKEPVAALG DEVENGSEGH GGIRGGGLRS GEAMEISSEN MGQGSQSGEE ASHEDAGGNK RRKSCHKHTP
101: EQIRILEAAF KESPHPDEKQ RQQLSEQLGL SASQVKFWFQ NRRCQTKVTQ ERHENSLLMH QENTKLKAEH HAIQVERLHM ALENNTATFS TSSSCSMGGI
201: QIRSRNSLDD HVDVGHDDKT MFLELASRAL DELTMMCSSG EPLWVRSIET GRDDLNYNEY ARLFRHHDDD SGDRRGVWSV EVSRETAVVY GGVTQLVHTF
301: MDVNQWKEMF PSMVTKASTL EVIRAGESDH LDGIMQLMSA EIQTLTPLIP TRELHFLRHC KKLGAQKWAI VDVSLDNFEP GARTSSTLCM CLKKPSGCIV
401: EEQSLARCCK VTWVENVKCR KTAVPAMYRQ TVTTSGLAFG ARRWVAALQL QCERMVFSVA TNVLTWGLNG VDTVSGRQSV LKLAQRMTSS LYRAIGASRV
501: RSWRKRLNYN GPCEIRVMCR KSRGEGGEPQ GLVACAVLSQ WLPVNPAAIF GYLLDKSRRH EWDLMMHGQS VQSYVTVRKG DDGNCVTAYA MKSSVEELSG
601: KWILQDSSAS PCESTVAYAP IDAAVLRPVI DGHDSSAVAV LPFGFVVMPA LITSREQDRT AVDSAGSLVT MVFQALFSSS ATDAALSANA MKDVAHLVFR
701: TLDNIKKALR C

Best Arabidopsis Sequence Match ( AT1G79840.1 )
(BLAST)

001: MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR
101: KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP
201: DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP
301: QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE
401: KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS
501: LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA
601: HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG
701: SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC

Arabidopsis Description

GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.