Factsheet for PGSC0003DMT400006770

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120620.2.1	Tomato	nucleus	96.24	95.87
VIT_09s0002g04340.t01	Wine grape	nucleus	70.98	73.07
KRH23432	Soybean	plastid	69.3	70.21
KRH09884	Soybean	plastid	68.01	69.91
KRH47277	Soybean	nucleus	65.16	66.98
KRH44348	Soybean	nucleus	63.73	65.78
GSMUA_Achr3P15400_001	Banana	nucleus	60.49	62.35
Bra003535.1-P	Field mustard	nucleus	59.72	61.47
AT1G79840.2	Thale cress	nucleus, plastid	60.75	60.44
GSMUA_Achr8P27340_001	Banana	nucleus	58.03	59.81
CDX79408	Canola	nucleus	59.72	59.1
CDX67929	Canola	nucleus	59.59	58.75
Os01t0760800-00	Rice	nucleus	10.1	58.21
HORVU0Hr1G006920.1	Barley	nucleus	7.12	55.56
TraesCS3B01G331200.1	Wheat	nucleus	51.04	52.19
TraesCS3A01G305300.1	Wheat	nucleus	51.17	51.91
HORVU3Hr1G073290.1	Barley	nucleus	43.78	51.52
PGSC0003DMT400061859	Potato	nucleus	41.19	46.15
OQU87592	Sorghum	nucleus	42.49	46.13
TraesCS3D01G296500.3	Wheat	nucleus	47.28	45.97
PGSC0003DMT400029291	Potato	nucleus	39.51	43.76
PGSC0003DMT400005277	Potato	nucleus	41.45	43.66
PGSC0003DMT400071377	Potato	nucleus	44.43	41.78
PGSC0003DMT400019986	Potato	nucleus	42.88	40.91
PGSC0003DMT400048971	Potato	nucleus	29.4	39.96
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	15.54	39.47
PGSC0003DMT400069312	Potato	nucleus	36.27	39.16
PGSC0003DMT400094124	Potato	nucleus	38.34	39.15
PGSC0003DMT400006155	Potato	nucleus	36.27	36.65
PGSC0003DMT400076898	Potato	cytosol	22.8	35.56
PGSC0003DMT400062468	Potato	cytosol	16.19	35.01
PGSC0003DMT400037055	Potato	nucleus	36.14	34.36
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	15.41	33.81
PGSC0003DMT400042908	Potato	nucleus	21.76	33.73
PGSC0003DMT400080861	Potato	nucleus	19.43	32.68
PGSC0003DMT400086035	Potato	nucleus	27.59	32.42
PGSC0003DMT400085057	Potato	cytosol	19.95	32.22
PGSC0003DMT400028197	Potato	cytosol	13.73	31.83
PGSC0003DMT400028195	Potato	nucleus	15.54	31.5
PGSC0003DMT400051268	Potato	cytosol	20.21	31.26
PGSC0003DMT400076902	Potato	nucleus	26.3	30.3
PGSC0003DMT400037397	Potato	cytosol	19.04	29.94
PGSC0003DMT400034503	Potato	cytosol, nucleus	26.3	29.81
PGSC0003DMT400038820	Potato	extracellular	13.86	29.4
PGSC0003DMT400092271	Potato	nucleus	9.84	28.68
PGSC0003DMT400095329	Potato	cytosol	10.23	28.62
PGSC0003DMT400095083	Potato	cytosol	4.4	28.1
PGSC0003DMT400036411	Potato	nucleus	18.91	27.81
PGSC0003DMT400051266	Potato	cytosol	13.47	26.74

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102591633	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	UniProt:M0ZRY5	PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400002627	PGSC:PGSC0003DMG400002627
EnsemblPlants:PGSC0003DMT400006770	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF272
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000294D0F3
RefSeq:XP_006343080.1	SEG:seg	:	:	:	:

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002627]

Coordinates

chr3:+:60016828..60023799

Molecular Weight (calculated)

85950.6 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.525

Length

772 amino acids

Sequence
(BLAST)

001: MVVVDMSNNH PPSHETKDFF PSPALSLSLA GIFRDGGGAG SSAGNMETTE EVDEGSAAAS RGGRPREETS TVEISSENSE QMRSRGSDDD LEHDDTCNED
101: EEDPNNNSKK KKRKKYHRHT VQQIREMEAL FKESPHPDEK QRQQLSKQLG LHPRQVKFWF QNRRTQIKAI QERHENSLLK AEIEKLREEN KGLRGTSKNP
201: SCPNCGFASS SNNAPTLPAE EQQLRIENAR LRAEVEKLRA ALGKYPLGTS PNSSSSCSGG NDEENKSALD FYTGIFGLEK PRIMHIVNQA MEQLTKMATS
301: GEPLWIKSFE TGREILNYDE YTKEFPPGDV KSKRMCIEAS RDTGIVFMEL PRLVQTFMDV NQWREMFPSI ISKAATVDVI CNGTEGANSW DGAVQLMFAE
401: VQMLTPVVGT REVYFVRYCK QMSAAQWGIV DVSVDKVEGS IDASLLKCRK LPSGCILQEQ SNAHCKVTWV EHLECQKSIV DSLYRVTVNS GQAFGARRWM
501: ATLQQQCERL LFFMATNIPT KDTTGVATLA GRKSILTLAQ RMTWGFYRVL GASSYNTWNK VPSKTGQEDI RMTSRRNLTD PGEPQGLILC AVSSIWLPVS
601: RNVLFDFLKD ENHRHEWDVM SNGGPVQSVA NLAKGQDKGN AVSIQAVKLR ENNMWILQDT CTNAYESAVV YAPVDIAGMQ SVITGCDSSN IAVLPSGFSI
701: LPDGLESRPF VITSRPEDRS SEGGSLLTVA FQILTSNSPT TKLSKESVES INNLLSCTLH KIKTRFQCDN GY

Best Arabidopsis Sequence Match ( AT1G79840.1 )
(BLAST)

001: MSMAVDMSSK QPTKDFFSSP ALSLSLAGIF RNASSGSTNP EEDFLGRRVV DDEDRTVEMS SENSGPTRSR SEEDLEGEDH DDEEEEEEDG AAGNKGTNKR
101: KRKKYHRHTT DQIRHMEALF KETPHPDEKQ RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA ELEKLREENK AMRESFSKAN SSCPNCGGGP
201: DDLHLENSKL KAELDKLRAA LGRTPYPLQA SCSDDQEHRL GSLDFYTGVF ALEKSRIAEI SNRATLELQK MATSGEPMWL RSVETGREIL NYDEYLKEFP
301: QAQASSFPGR KTIEASRDAG IVFMDAHKLA QSFMDVGQWK ETFACLISKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLSPE
401: KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS
501: LGVTTLAGRK SVLKMAQRMT QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPALL FDFFRDEARR HEWDALSNGA
601: HVQSIANLSK GQDRGNSVAI QTVKSREKSI WVLQDSSTNS YESVVVYAPV DINTTQLVLA GHDPSNIQIL PSGFSIIPDG VESRPLVITS TQDDRNSQGG
701: SLLTLALQTL INPSPAAKLN MESVESVTNL VSVTLHNIKR SLQIEDC

Arabidopsis Description

GL2HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HQC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.