Factsheet for PGSC0003DMT400006155

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400069312
PGSC0003DMT400072353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17710.1	PGSC0003DMT400069312	AT1G73360.1	21798944
AT4G17710.1	PGSC0003DMT400072353	AT3G11590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076370.2.1	Tomato	nucleus	98.17	89.07
VIT_02s0012g02030.t01	Wine grape	nucleus	72.77	69.67
KRH74360	Soybean	nucleus	66.75	64.64
KRH39579	Soybean	nucleus	67.54	64.5
GSMUA_Achr5P14100_001	Banana	nucleus	56.68	57.28
GSMUA_Achr4P19010_001	Banana	nucleus	57.98	55.31
AT5G46880.3	Thale cress	nucleus	58.38	54.0
CDY43458	Canola	nucleus	56.54	53.2
Bra017519.1-P	Field mustard	nucleus	56.28	52.7
Bra024984.1-P	Field mustard	nucleus	54.06	51.95
CDY03177	Canola	nucleus	56.02	51.82
CDY33492	Canola	nucleus	53.66	51.51
CDX77711	Canola	nucleus	55.37	51.4
AT4G17710.1	Thale cress	nucleus	47.51	51.2
TraesCS1A01G193400.1	Wheat	nucleus, plastid	57.33	50.17
Os10t0575600-01	Rice	nucleus	57.59	49.89
TraesCS1D01G197300.1	Wheat	nucleus	57.46	49.72
HORVU1Hr1G050620.2	Barley	nucleus	56.94	49.15
TraesCS1B01G208400.1	Wheat	nucleus	57.07	48.99
CDY08866	Canola	nucleus	47.12	48.91
KXG38837	Sorghum	nucleus	56.15	48.64
CDX76559	Canola	nucleus	46.2	48.09
Bra021035.1-P	Field mustard	nucleus	46.2	48.09
Zm00001d030069_P004	Maize	nucleus	55.63	48.08
PGSC0003DMT400061859	Potato	nucleus	42.8	47.46
PGSC0003DMT400069312	Potato	nucleus	43.46	46.43
PGSC0003DMT400029291	Potato	nucleus	41.49	45.48
PGSC0003DMT400005277	Potato	nucleus	42.54	44.34
PGSC0003DMT400048971	Potato	nucleus	30.63	41.2
PGSC0003DMT400071377	Potato	nucleus	43.06	40.07
PGSC0003DMT400094124	Potato	nucleus	39.27	39.68
PGSC0003DMT400019986	Potato	nucleus	41.23	38.94
PGSC0003DMT400006770	Potato	nucleus	36.65	36.27
PGSC0003DMT400076898	Potato	cytosol	22.91	35.35
PGSC0003DMT400037055	Potato	nucleus	37.43	35.22
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	13.74	34.54
PGSC0003DMT400085057	Potato	cytosol	21.34	34.1
PGSC0003DMT400034503	Potato	cytosol, nucleus	29.19	32.75
PGSC0003DMT400038820	Potato	extracellular	15.45	32.42
PGSC0003DMT400051268	Potato	cytosol	21.07	32.26
PGSC0003DMT400062468	Potato	cytosol	15.05	32.21
PGSC0003DMT400042908	Potato	nucleus	20.81	31.93
PGSC0003DMT400028197	Potato	cytosol	13.74	31.53
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	14.4	31.25
PGSC0003DMT400028195	Potato	nucleus	15.58	31.23
PGSC0003DMT400086035	Potato	nucleus	26.83	31.2
PGSC0003DMT400037397	Potato	cytosol	19.76	30.75
PGSC0003DMT400080861	Potato	nucleus	18.46	30.72
PGSC0003DMT400092271	Potato	nucleus	10.34	29.81
PGSC0003DMT400051266	Potato	cytosol	15.05	29.56
PGSC0003DMT400076902	Potato	nucleus	25.92	29.55
PGSC0003DMT400036411	Potato	nucleus	19.9	28.95
PGSC0003DMT400095329	Potato	cytosol	9.95	27.54
PGSC0003DMT400095083	Potato	cytosol	4.19	26.45

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
UniProt:M0ZQX4	PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400002394	PGSC:PGSC0003DMG400002394	EnsemblPlants:PGSC0003DMT400006155
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000294A3FD	SEG:seg

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002394]

Coordinates

chr8:+:48957948..48963568

Molecular Weight (calculated)

85050.1 Da

IEP (calculated)

5.048

GRAVY (calculated)

-0.373

Length

764 amino acids

Sequence
(BLAST)

001: MDSGSGSEHI EGMSGNELEP EQQQQQQQQA GKKKRYHRHT VRQIQEMEAL FKECPHPDDK QRLKLSQDLG LKPRQVKFWF QNRRTQMKAQ QDRSDNVILR
101: AENDNLKNEN YRLQAALRSI MCPTCGGPAM LGEMGYDEQQ LRLENARLKE EFERVCCLVS QYNGRGPPNP LLPPSLELDM SINNFSSKFE DQPNCVDMVP
201: VPLLMPDQNN TQFSGGPMIL EEEKSLAMEL ALSSMDELVK MCTSSDPLWI RASNDSGKEV LNVEEYSRMF PWPVGVKHNG NELKIEATRS SAVVIMNSIT
301: LVDAFLDTNK CIELFPSIIS RAKTIQVVTS GVSGHASGSL QLMFMEMQVL TPLVSTRECY FLRYCQQNVE EGSWAIVDFP LDSLHNNFPP PFPYFKRRPS
401: GCIIQDMPNG YSRVTWVEHA EVEENPVNQI FNHFVTSGVA FGAQRWLSIL QRQCERLASL MARNISDLGV IPSPEARKSL MNLAQRMIKT FCMNISTCCG
501: QSWTALSDSP DDTVRITTRK VTEPGQPNGL ILSAVSTSWL PYNHFQVFDL LRDERRRAQL DVLSNGNSLH EVAHIANGSH PGNCISLLRI NVASNSSQSV
601: ELMLQESCTD DSGSLVVYTT VDVDAIQLAM NGEDPSCIPL LPLGFVITPI NNGQANINNC DNNVSGIEAN SSQSSEKRQN LSSIQEYSGG CLLTVGLQVL
701: ASTIPSAKLN LSSVTAINHH LCNTVQQINA ALVAFYPDIE ITAPSSPPPQ QPESSKQVDE NSNS

Best Arabidopsis Sequence Match ( AT5G46880.3 )
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Arabidopsis Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.