Factsheet for GSMUA_Achr5P14100_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P15140_001
GSMUA_Achr6P05990_001
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001
GSMUA_Achr7P11310_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17710.1	GSMUA_Achr10P...	AT1G73360.1	21798944
AT4G17710.1	GSMUA_Achr10P...	AT1G73360.1	21798944
AT4G17710.1	GSMUA_Achr2P15140_001	AT1G73360.1	21798944
AT4G17710.1	GSMUA_Achr6P05990_001	AT1G73360.1	21798944
AT4G17710.1	GSMUA_Achr7P11310_001	AT1G73360.1	21798944
AT4G17710.1	GSMUA_Achr6P08260_001	AT3G11590.1	21798944
AT4G17710.1	GSMUA_Achr6P16290_001	AT3G11590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P19010_001	Banana	nucleus	84.52	79.78
VIT_02s0012g02030.t01	Wine grape	nucleus	67.99	64.41
KRH74360	Soybean	nucleus	63.36	60.71
KRH39579	Soybean	nucleus	64.02	60.5
TraesCS1D01G197300.1	Wheat	nucleus	66.27	56.74
PGSC0003DMT400006155	Potato	nucleus	57.28	56.68
HORVU1Hr1G050620.2	Barley	nucleus	66.14	56.5
TraesCS1A01G193400.1	Wheat	nucleus, plastid	64.95	56.24
KXG38837	Sorghum	nucleus	65.48	56.12
TraesCS1B01G208400.1	Wheat	nucleus	66.01	56.07
Os10t0575600-01	Rice	nucleus	65.34	56.01
Solyc08g076370.2.1	Tomato	nucleus	62.17	55.82
Zm00001d030069_P004	Maize	nucleus	64.55	55.2
AT5G46880.3	Thale cress	nucleus	55.56	50.85
Bra017519.1-P	Field mustard	nucleus	54.76	50.74
CDY43458	Canola	nucleus	54.37	50.62
CDY03177	Canola	nucleus	55.03	50.36
CDX77711	Canola	nucleus	54.1	49.7
Bra024984.1-P	Field mustard	nucleus	51.98	49.43
CDY33492	Canola	nucleus	51.98	49.37
AT4G17710.1	Thale cress	nucleus	44.84	47.81
CDY08866	Canola	nucleus	45.5	46.74
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	40.61	46.52
Bra021035.1-P	Field mustard	nucleus	44.97	46.32
CDX76559	Canola	nucleus	44.97	46.32
GSMUA_Achr10P...	Banana	nucleus	43.39	46.13
GSMUA_Achr6P05990_001	Banana	nucleus	36.77	46.1
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	42.33	44.08
GSMUA_Achr10P...	Banana	nucleus	38.76	42.96
GSMUA_Achr7P11310_001	Banana	nucleus	41.4	42.53
GSMUA_Achr10P...	Banana	nucleus	39.68	41.96
GSMUA_Achr11P...	Banana	plastid	43.65	41.83
GSMUA_Achr2P15140_001	Banana	nucleus	40.74	41.68
GSMUA_Achr11P...	Banana	nucleus	39.68	40.32
GSMUA_AchrUn_...	Banana	nucleus	41.01	40.31
GSMUA_Achr1P18760_001	Banana	nucleus	40.21	40.21
GSMUA_Achr7P00210_001	Banana	nucleus	36.11	40.21
GSMUA_Achr5P20050_001	Banana	nucleus	41.27	39.25
GSMUA_Achr5P10510_001	Banana	nucleus	41.14	39.12
GSMUA_Achr11P...	Banana	nucleus	39.95	38.92
GSMUA_Achr3P12410_001	Banana	nucleus	35.05	35.71
GSMUA_Achr3P15400_001	Banana	nucleus	33.86	34.18
GSMUA_Achr8P27340_001	Banana	nucleus	30.95	31.24

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSMUA_Achr5G14100_001	EnsemblPlants:GSMUA_Achr5P14100_001	EnsemblPlants:GSMUA_Achr5T14100_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	UniProt:M0SYD9	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000294DF5B	SEG:seg	:

Description

Homeobox-leucine zipper protein ROC3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G14100_001]

Coordinates

chr5:+:10146248..10149653

Molecular Weight (calculated)

83193.4 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.279

Length

756 amino acids

Sequence
(BLAST)

001: MYGDCQVLSS MVGGNVVSPD SLFSSSIQNP SLSFMANMPP FHAFSSIIPK EEGMMLMGRG GSKEEEMESR SGSGPLDGQT AAKKKRYHRH TARQIQEMEA
101: MFKECPHPDE KQRMKLSHEL GLKPRQVKFW FQNRRTQMKA QQDRADNVVL RAENESLKND NFRLQAAIRN VVCPSCGGPA ILGEMSFDEQ QLRIENARLK
201: DERLSCIASR YSGRQHFHEP PVVSCTDLIP IPQISDEPSP FPGMLIMDQD RPLVLDLAMT AADHLVRMCN TNEPLWIRRG GSTVEVLNLE EHARMCPWPM
301: DLKQQQGRFR TETSRDSAMV IMNGITMVDA FLDANKWMEL FPSLVAKSRT VQVLSPGVPG HGNGCLHLMH AELQFLSPLV PAREAHFFRY CQQNSEEGTW
401: IIVDFPVDGF RDGIQSPFPW YRRRTSGCVI QDMPNGYSKV IWVEHAEVED KPVHQIFQQF VSAGEAFGAT RWVSVLQRQC ERLASLMARN ISDNGVISSP
501: EARKNMMRLS QRMITTFCTG VYASGMQSWT ALSDSSDDTV RVTTKKNTAP GQPNGVILTA VSTTWLPSSH HQVFELLTDE QRRSQLDVLS SGNSLHEVAH
601: IANGSHPRNC ISLLRVNAAS NSSHSVDLLL QESSTHPSGG SIVVYAAIDV DAVQVAMSSE DPSYIPLLPT GFVISPAARQ PNAGTGSGSD GHATVGCLLT
701: VGMQVLATAV PSAKLNLSTV TAINNHLCNT VQQVRAVIAG AGGTAMAEPA AVAPDQ

Best Arabidopsis Sequence Match ( AT5G46880.3 )
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Arabidopsis Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.