CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89393
EES05874
EES11990
KXG30263

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17710.1	EER89393	AT1G73360.1	21798944
AT4G17710.1	EES05874	AT1G73360.1	21798944
AT4G17710.1	EES11990	AT3G11590.1	21798944
AT4G17710.1	KXG30263	AT3G11590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030069_P004	Maize	nucleus	91.72	91.52
Os10t0575600-01	Rice	nucleus	82.2	82.2
TraesCS1D01G197300.1	Wheat	nucleus	79.59	79.5
HORVU1Hr1G050620.2	Barley	nucleus	79.71	79.44
TraesCS1A01G193400.1	Wheat	nucleus, plastid	78.12	78.92
TraesCS1B01G208400.1	Wheat	nucleus	79.25	78.54
GSMUA_Achr5P14100_001	Banana	nucleus	56.12	65.48
GSMUA_Achr4P19010_001	Banana	nucleus	57.94	63.8
VIT_02s0012g02030.t01	Wine grape	nucleus	56.58	62.53
KRH74360	Soybean	nucleus	53.06	59.32
KRH39579	Soybean	nucleus	53.29	58.75
PGSC0003DMT400006155	Potato	nucleus	48.64	56.15
Solyc08g076370.2.1	Tomato	nucleus	52.15	54.63
AT5G46880.3	Thale cress	nucleus	47.73	50.97
CDY43458	Canola	nucleus	46.49	50.49
Bra017519.1-P	Field mustard	nucleus	46.26	50.0
CDY03177	Canola	nucleus	46.83	50.0
CDY33492	Canola	nucleus	44.67	49.5
Bra024984.1-P	Field mustard	nucleus	44.56	49.43
CDX77711	Canola	nucleus	45.69	48.97
AT4G17710.1	Thale cress	nucleus	39.34	48.94
CDY08866	Canola	nucleus	39.91	47.83
Bra021035.1-P	Field mustard	nucleus	39.46	47.41
CDX76559	Canola	nucleus	39.46	47.41
EES05874	Sorghum	nucleus	35.71	44.55
EER89393	Sorghum	nucleus	34.81	43.86
EES13460	Sorghum	mitochondrion, nucleus	37.64	42.51
EES11464	Sorghum	nucleus	37.76	42.21
EES14500	Sorghum	nucleus	36.73	39.8
EES02604	Sorghum	nucleus	35.71	38.65
EER99222	Sorghum	nucleus	35.94	36.35
KXG26935	Sorghum	nucleus	32.77	36.03
OQU87592	Sorghum	nucleus	25.62	31.79
OQU81174	Sorghum	nucleus	22.68	27.1
OQU81266	Sorghum	nucleus	22.68	26.01
EER98409	Sorghum	nucleus	21.32	25.75
EES01587	Sorghum	nucleus	21.77	25.26

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	UniProt:A0A1B6QLR7	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	EnsemblPlants:KXG38837	ProteinID:KXG38837	ProteinID:KXG38837.1	ProteinID:OQU92068.1	PFAM:PF00046
PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF267
SMART:SM00234	SMART:SM00389	EnsemblPlantsGene:SORBI_3001G286700	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom
UniParc:UPI0003E73ECB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:56194085..56200997

Molecular Weight (calculated)

94811.4 Da

IEP (calculated)

5.469

GRAVY (calculated)

-0.212

Length

882 amino acids

Sequence
(BLAST)

001: MFGDCQVLSS MAAMAGASSS ADALFIPNPG ALAGFMSSSA AAMPFHHFST TAASLIPKEE GGIMGALQVA KDEDMDQLEM DMELSGGSGS AHLDGLLSFA
101: DVDDDRTEQK PQHSGLELQT TVDAAGQQQQ QQQLATANGK KKRYHRHTAH QIQQMEALFK ECPHPDDKQR LKLSQELGLK PRQVKFWFQN RRTQMKAQQD
201: RADNVLLRAE NESLKSDNYR LQAAIRNVVC PNCGHAAVLG EMSYEEQQLR IENARLKDEL DRLACIATRY GGGRQPSMSS ALGCLSAPPP VLMPPLDLDM
301: NVYARHFTDQ SSVMGCGDLI QSVLAPQQQI PVGGAEHHAT SSFMGAAIGP VQEQDRQLVL DLAATAADTL AKMCRAGEPL WLRRRGASSE VMVADEHARM
401: FSWPVDGGQQ GSASTGAAAR TEGSRDSAVV IMNSITLVDA FLDANKWMEL FPSIVSKART IQVINHGARS GHMGSGSLLL MQAEVQFPSP LVPAREVVFF
501: RYCMHNGDEG TWSVVDFPAD GFQLEGLQTS SVVKCCRRPS GCIIQDMPNG YSSVVWVEHM EMVGEEKPLH QVFKDYVASG YAFGATRWVS LLQRQCERLA
601: SELARNIADL GVIRTPEART NMMKLSQRMI TTFSANISAS GSQSWTALSE TTEDTIRVTT RKNTDPGQPS GVILTAVSTS WLPFSHQQVF ELLADEQQRC
701: QLEILSNGGS LHEVAHIANG SHPRNCISLL RINAASNSSQ NVELMLQETS THPDGGSLVV FATVDVDAIQ VTMSGEDPSY IPLLPLGFAI FPATNPSPAA
801: TSTSSGNGES SPGNTDEPTS GCLLTVGMQV LASAVPSAKL NLSSITAINS HVCNAIHQIT TALKGQGAGV SGVEPVAAAG SD

Best Arabidopsis Sequence Match ( AT5G46880.3 )
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Arabidopsis Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.