Factsheet for Zm00001d030069_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d003996_P001
Zm00001d018225_P001
Zm00001d025208_P002
Zm00001d037140_P004
Zm00001d044973_P001
Zm00001d052133_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17710.1	Zm00001d018225_P001	AT1G73360.1	21798944
AT4G17710.1	Zm00001d037140_P004	AT1G73360.1	21798944
AT4G17710.1	Zm00001d044973_P001	AT1G73360.1	21798944
AT4G17710.1	Zm00001d052133_P001	AT1G73360.1	21798944
AT4G17710.1	Zm00001d000402_P001	AT3G11590.1	21798944
AT4G17710.1	Zm00001d003996_P001	AT3G11590.1	21798944
AT4G17710.1	Zm00001d025208_P002	AT3G11590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38837	Sorghum	nucleus	91.52	91.72
Os10t0575600-01	Rice	nucleus	80.77	80.95
HORVU1Hr1G050620.2	Barley	nucleus	78.51	78.42
TraesCS1D01G197300.1	Wheat	nucleus	78.05	78.14
TraesCS1A01G193400.1	Wheat	nucleus, plastid	77.04	78.01
TraesCS1B01G208400.1	Wheat	nucleus	77.94	77.42
GSMUA_Achr5P14100_001	Banana	nucleus	55.2	64.55
GSMUA_Achr4P19010_001	Banana	nucleus	56.45	62.3
VIT_02s0012g02030.t01	Wine grape	nucleus	55.32	61.28
KRH74360	Soybean	nucleus	52.71	59.06
KRH39579	Soybean	nucleus	52.6	58.12
PGSC0003DMT400006155	Potato	nucleus	48.08	55.63
Solyc08g076370.2.1	Tomato	nucleus	51.24	53.8
CDY43458	Canola	nucleus	46.15	50.25
AT5G46880.3	Thale cress	nucleus	46.72	50.0
Bra017519.1-P	Field mustard	nucleus	45.93	49.75
CDY03177	Canola	nucleus	46.27	49.52
Bra024984.1-P	Field mustard	nucleus	44.12	49.06
CDY33492	Canola	nucleus	44.12	48.99
CDX77711	Canola	nucleus	45.36	48.72
AT4G17710.1	Thale cress	nucleus	38.57	48.1
CDY08866	Canola	nucleus	39.37	47.28
CDX76559	Canola	nucleus	38.91	46.87
Bra021035.1-P	Field mustard	nucleus	38.91	46.87
Zm00001d018225_P001	Maize	nucleus	36.54	46.68
Zm00001d052133_P001	Maize	nucleus	35.97	45.56
Zm00001d037140_P004	Maize	nucleus	35.18	45.27
Zm00001d044973_P001	Maize	nucleus	34.95	44.85
Zm00001d049443_P005	Maize	nucleus	37.1	41.21
Zm00001d040091_P001	Maize	nucleus	11.99	40.61
Zm00001d002234_P003	Maize	nucleus	36.43	40.55
Zm00001d024701_P001	Maize	nucleus	36.2	40.15
Zm00001d000247_P001	Maize	plasma membrane	31.9	39.22
Zm00001d040090_P002	Maize	nucleus	34.84	38.36
Zm00001d026351_P003	Maize	nucleus	36.43	38.15
Zm00001d021236_P004	Maize	nucleus	35.52	34.77
Zm00001d026088_P002	Maize	nucleus	32.13	34.05
Zm00001d019477_P001	Maize	nucleus	23.3	27.99
Zm00001d004234_P001	Maize	nucleus	21.27	26.59
Zm00001d043231_P001	Maize	nucleus	21.95	24.49
Zm00001d004230_P030	Maize	nucleus	21.83	23.71

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EntrezGene:542009	ncoils:Coil	ProteinID:DAA34953.1	UniProt:G2J5R8
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	ProteinID:ONM00122.1	ProteinID:ONM00125.1	ProteinID:ONM00127.1
PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF267	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom
UniParc:UPI000221846F	EnsemblPlantsGene:Zm00001d030069	EnsemblPlants:Zm00001d030069_P004	EnsemblPlants:Zm00001d030069_T004	SEG:seg	:

Description

outer cell layer4Homeodomain leucine zipper family IV protein

Coordinates

chr1:-:103280322..103286080

Molecular Weight (calculated)

94365.7 Da

IEP (calculated)

5.472

GRAVY (calculated)

-0.192

Length

884 amino acids

Sequence
(BLAST)

001: MFGDCQVLSS MAAVAGASSS ADTLFIPNPG ALAGFMSSSS AAAAMPFHHF STTAASLVPK EEGGIMGALQ VAKDEDMDQL EMEMELSGGS GSGHLDGLLS
101: FADVDDDRPE QKPQHSGLEL QTTADAAGQQ QQLATANGKK KRYHRHTAHQ IQQMEALFKE CPHPDDKQRL KLSQELGLKP RQVKFWFQNR RTQMKAQQDR
201: ADNVLLRAEN ESLKSDNYRL QAAIRNVVCP NCGHAAVLGE MSYEEQQLRI ENARLKDELD RLACIATRYG GGRQPSMSSS ALVCLSAPPP VLMPPLDLDM
301: NVYSRHFTDQ SPVMGCGDLI QSVLGPPSQQ ITGGAEHHAS TPSFMGAMAP VQEQDRQLVL DLAAAAADTL AKMCRAGESL WLRRRGASSE VMVADEHARM
401: FSWPVNGGQQ DSSASPGGAA ARTEGSRDGT VVIMNSITLV DAFLDANKWM ELFPSIVSKA RTIQIINHGA ASGHMGSGSL LLMQAELQFP SPLVPAREVV
501: FFRYCVHNGD EGTWSLVDFP AEGFQLEALQ TPSVVRCCRR PSGCIIQDMP NGYSSVVWVE HTEIVGEEKP LHQVFKDYVA SGSAFGATRW VSLLQRQCER
601: LASELARNIA DLGVIRTPEA RTNMMKLSQR MITSFSANIS ASGSQSWTSL SETTEDTIRV TTRKNTDPGQ PSGVILTAVS TSWLPFNHQK VFELLADEQQ
701: RCQLEIMSSG GSLHEVAHIA NGSHPKNCIS LLRINAASNS SQNVELMLQE SSTHPDGGSL VVFATVDVDA IQVTMSGEDP SYIPLLPLGF AIFPAANPSA
801: AATSAAGSGD GQSSPAGNAD EPASGCLLTV GMQVLASAVP SAKLNLSSVT AINSHVCNAV HQITAALKGA GASGAAEPAA AASE

Best Arabidopsis Sequence Match ( AT5G46880.3 )
(BLAST)

001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS

Arabidopsis Description

HDG5Homeobox-leucine zipper protein HDG5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.