Factsheet for Zm00001d004230_P030

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81174	Sorghum	nucleus	65.36	72.09
Zm00001d004234_P001	Maize	nucleus	38.33	44.13
Zm00001d019477_P001	Maize	nucleus	36.49	40.35
TraesCS5B01G330300.1	Wheat	nucleus	29.85	32.36
HORVU5Hr1G083940.3	Barley	nucleus	30.34	31.83
TraesCS5D01G335900.1	Wheat	nucleus	29.12	31.47
Zm00001d040090_P002	Maize	nucleus	30.47	30.88
TraesCS5A01G330200.1	Wheat	nucleus	28.13	30.78
Zm00001d052133_P001	Maize	nucleus	25.92	30.23
Zm00001d018225_P001	Maize	nucleus	25.43	29.91
Zm00001d044973_P001	Maize	nucleus	25.18	29.75
Zm00001d037140_P004	Maize	nucleus	25.06	29.69
TraesCS4A01G231300.2	Wheat	nucleus	28.01	29.53
TraesCS4D01G082600.1	Wheat	nucleus	29.12	29.44
Zm00001d026088_P002	Maize	nucleus	29.61	28.9
TraesCS4B01G084700.16	Wheat	extracellular, golgi	28.62	28.73
Zm00001d021236_P004	Maize	nucleus	31.45	28.35
Zm00001d049443_P005	Maize	nucleus	27.15	27.76
Zm00001d002234_P003	Maize	nucleus	26.9	27.58
Zm00001d026351_P003	Maize	nucleus	27.4	26.42
Zm00001d024701_P001	Maize	nucleus	25.8	26.35
Os08t0292000-01	Rice	nucleus	25.55	26.3
Zm00001d000247_P001	Maize	plasma membrane	23.1	26.15
Zm00001d040091_P001	Maize	nucleus	8.23	25.67
Zm00001d043231_P001	Maize	nucleus	21.25	21.84
Zm00001d030069_P004	Maize	nucleus	23.71	21.83

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	UniProt:A0A1D6EEL0	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	ProteinID:ONM18651.1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF484	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI000843558D	EnsemblPlantsGene:Zm00001d004230	EnsemblPlants:Zm00001d004230_P030	EnsemblPlants:Zm00001d004230_T030
SEG:seg	:	:	:	:	:

Description

Homeobox-transcription factor 96Homeodomain leucine zipper family IV protein

Coordinates

chr2:+:94054925..94067668

Molecular Weight (calculated)

90631.7 Da

IEP (calculated)

6.247

GRAVY (calculated)

-0.244

Length

814 amino acids

Sequence
(BLAST)

001: MKMQEAKIEK MKYEHLTREA ALAEKELLEE EYKKKFDEAK KELSLENDLA ACAPWWCSAF VPRRSGWRRR RYRLKNTEPD IGVNMGDDEL IYLPDIEEYD
101: MDALMGDEDQ LNTDQAIFCE EHNLDKVSSS KRPKRFTVQQ LQQLESSFQK CSHPDDEMRQ ELAAKVGISA RQVKFWFQNR RSQIKVRSCG TENNKYRRQN
201: AELLATNMEL KEQLKGMTCS RCDAPTIMQK WQLMDENAKL REMYSLASAE LTKLMQEANL PPSVILEDMA LVTSMNPLSS NASSSRSTIN QDELLSYVEC
301: AIKEFEMLVR DGTPLWLPTI GGDVLNSKEY ACQRFPRLHG TIRPEGFVVE ATRDTAIVKG SAPDIVDILT DVPRWYKAFP CIVAALRAYH VIFSGPFASG
401: NVLIQEINVD LSVESPRPPL RNMKFLRITK QNANGDFVVV DVSINDVQGI HEQQGSQHKH TMLPSGCLIK DKGDGYCQVT WIVHAEYEEA SVPPLFRQFY
501: QSGLAFGASR WLASLQRHCE YMVVKHSIQV PTGCVSGSGV LTLSALGRWN LLELAQRMMA IFYKTTSGLP TVEPGNIVTR WGRGCMGTTG EMLEPAVRMV
601: LGNYFGAMDG QPSPLQVLSA TTTVWLPGTP PESVFNYLCN GQRRGEWDAF VCAGAVQELS SVATCPHLHG NAVSVLCPNV TNAANNAMLF LQQTSIDVSR
701: ALVVYSVVEE TMLRSVLDVS DDTSNLVLLP SGFAILPDGH GRAHHAAASN SSSALAGLNG TAGCLLTAAY QVPVPFNNLR HPDVQETYEN AGKRICHAIK
801: KIMDAVGAPI VVPI

Best Arabidopsis Sequence Match ( AT1G73360.1 )
(BLAST)

001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA

Arabidopsis Description

HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.