Factsheet for Zm00001d026088_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26935	Sorghum	nucleus	83.21	86.53
Os04t0569100-01	Rice	nucleus	61.63	63.77
Zm00001d040090_P002	Maize	nucleus	59.59	61.89
GSMUA_Achr1P18760_001	Banana	nucleus	49.88	55.03
TraesCS2B01G419200.1	Wheat	nucleus	51.44	54.65
HORVU2Hr1G095210.1	Barley	nucleus	51.08	54.62
TraesCS2D01G398600.1	Wheat	nucleus	50.96	54.21
CDY18903	Canola	nucleus	45.44	53.76
VIT_15s0048g02000.t01	Wine grape	nucleus	52.16	53.64
CDX74762	Canola	nucleus	45.32	53.39
TraesCS2A01G401200.3	Wheat	nucleus	51.08	53.25
KRH40539	Soybean	nucleus	52.04	52.93
KRH00641	Soybean	nucleus	51.92	52.68
KRH48236	Soybean	nucleus	51.32	51.63
CDX67855	Canola	nucleus	48.08	51.41
Solyc01g091630.2.1	Tomato	nucleus	50.48	51.28
PGSC0003DMT400071377	Potato	nucleus	50.48	51.28
KRH65144	Soybean	nucleus	51.32	51.2
Bra004934.1-P	Field mustard	nucleus	48.2	51.15
CDY45684	Canola	nucleus	47.96	51.02
Bra037355.1-P	Field mustard	nucleus	48.32	51.01
Bra003439.1-P	Field mustard	nucleus	47.96	50.96
CDY51143	Canola	nucleus	48.2	50.89
CDX74347	Canola	nucleus	48.32	50.82
AT4G00730.1	Thale cress	nucleus	48.8	50.75
GSMUA_Achr3P12410_001	Banana	nucleus	45.08	50.67
CDY07201	Canola	nucleus	47.84	50.63
CDX91894	Canola	nucleus	48.2	50.63
PGSC0003DMT400019986	Potato	nucleus	48.68	50.19
AT3G61150.1	Thale cress	nucleus	48.32	49.88
Zm00001d040091_P001	Maize	nucleus	15.59	49.81
Zm00001d018225_P001	Maize	nucleus	38.61	46.53
Zm00001d052133_P001	Maize	nucleus	38.73	46.28
Zm00001d037140_P004	Maize	nucleus	37.05	44.98
Zm00001d044973_P001	Maize	nucleus	37.05	44.85
Zm00001d049443_P005	Maize	nucleus	42.57	44.6
Zm00001d021236_P004	Maize	nucleus	48.08	44.41
Zm00001d002234_P003	Maize	nucleus	42.09	44.21
Zm00001d024701_P001	Maize	nucleus	42.21	44.17
Zm00001d000247_P001	Maize	plasma membrane	37.89	43.95
Zm00001d026351_P003	Maize	nucleus	42.93	42.42
Zm00001d019477_P001	Maize	nucleus	31.89	36.14
Zm00001d004234_P001	Maize	nucleus	28.54	33.66
Zm00001d030069_P004	Maize	nucleus	34.05	32.13
Zm00001d004230_P030	Maize	nucleus	28.9	29.61
Zm00001d043231_P001	Maize	nucleus	24.7	26.01

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	UniProt:A0A1D6JC47	ProteinID:AQK45452.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF490	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	TMHMM:TMhelix	UniParc:UPI000844C57D
EnsemblPlantsGene:Zm00001d026088	EnsemblPlants:Zm00001d026088_P002	EnsemblPlants:Zm00001d026088_T002	SEG:seg	:	:

Description

outer cell layer2Outer cell layer2

Coordinates

chr10:+:138129427..138138311

Molecular Weight (calculated)

89835.6 Da

IEP (calculated)

6.705

GRAVY (calculated)

-0.056

Length

834 amino acids

Sequence
(BLAST)

001: MANAACVGGS FLGVEKGKPA TVSNLGAPAV LLLVLACLPL VLPSSDPKQG MSFGDLDGGG SAAGLQYPYG AFASSPVLSL TVVDARRRRG GGGNAKDASE
101: AENEGQSMMS GHLDVVLSGG GDGEDGEAAN QRKPKRKKPY NRHTPRQIEQ LEAMFKEFHH PDEKQRAQLS RQLGLDPRQV KFWFQNRRTH LKNQLERQEN
201: ARLKHENDKL RVENLSIREA IRDLVCSCCG GPAVLGELSP EEHQLRLENA RLRDELARVC TVTSKFIGKP MSHMELLLAK EPHPMTGSSL ELAVAVGVGS
301: SVPSSKMPVS TISELAGSTS SSTGTVTTPM VTASLPMVSI DKSKFAQLAV SAMNELVKMA RMNEPLWIPT IPSPGSPIME TLNFKEYLKA FSPCVGVKPT
401: GFVSEASRES GIVTIDSSAA LMEVFMDERR WSDIFYCIVA KASIVEEILP GVAGSRNGAL LLMQAELQML SPLVPIREVT FLRFCKQLAE GAWAVVDVSI
501: DGLQTDQCLA TNTKCRRLPS GCVLQDTPNG CKVTWVEHAE YPEASVHQLY QPLMRSGLAL GAGRWLATLQ RQCECLAILM SSLAAPEHDS AAVSLEGKWS
601: LLKLARRMME NFCAGMGASS SREWSMLDGF TGSTGKDVRV MVQNSVDEPG VPPGVVLSVA TAVWLPVTPE RLFNFLRDEE LRAEWDILSN GGPMQQVLRI
701: SKGQLDGNSV ALLRADHTDS HLNSILILQE TCTDRSGAMV VYTPVDFPAM QLVLGGGDSK NVALLPSGFV ILPAGSTASG LGHKARGSLL TVAFQILVNS
801: QPTAKLTVES VDTVYSLISC TIEKIKAALH CDVC

Best Arabidopsis Sequence Match ( AT3G61150.1 )
(BLAST)

001: MNFNGFLDDG AGASKLLSDA PYNNHFSFSA VDTMLGSAAI APSQSLPFSS SGLSLGLQTN GEMSRNGEIM ESNVSRKSSR GEDVESRSES DNAEAVSGDD
101: LDTSDRPLKK KKRYHRHTPK QIQDLESVFK ECAHPDEKQR LDLSRRLNLD PRQVKFWFQN RRTQMKTQIE RHENALLRQE NDKLRAENMS VREAMRNPMC
201: GNCGGPAVIG EISMEEQHLR IENSRLKDEL DRVCALTGKF LGRSNGSHHI PDSALVLGVG VGSGGCNVGG GFTLSSPLLP QASPRFEISN GTGSGLVATV
301: NRQQPVSVSD FDQRSRYLDL ALAAMDELVK MAQTREPLWV RSSDSGFEVL NQEEYDTSFS RCVGPKQDGF VSEASKEAGT VIINSLALVE TLMDSERWAE
401: MFPSMVSRTS TTEIISSGMG GRNGALHLMH AELQLLSPLV PVRQVSFLRF CKQHAEGVWA VVDVSIDSIR EGSSSSCRRL PSGCLVQDMA NGYSKVTWIE
501: HTEYDENHIH RLYRPLLRCG LAFGAHRWMA ALQRQCECLT ILMSSTVSTS TNPSPINCNG RKSMLKLAKR MTDNFCGGVC ASSLQKWSKL NVGNVDEDVR
601: IMTRKSVNNP GEPPGIILNA ATSVWMPVSP RRLFDFLGNE RLRSEWDILS NGGPMKEMAH IAKGHDRSNS VSLLRASAIN ANQSSMLILQ ETSIDAAGAV
701: VVYAPVDIPA MQAVMNGGDS AYVALLPSGF AILPNGQAGT QRCAAEERNS IGNGGCMEEG GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK
801: AALHCDST

Arabidopsis Description

HDG1HDG1 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Q4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.