CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93211
KRG94078
KRG98388
KRH07149
KRH46471
KRH73971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61150.1	KRG98388	AT1G51355.1	21798944
AT3G61150.1	KRH46471	AT1G51355.1	21798944
AT3G61150.1	KRH73971	AT1G51355.1	21798944
AT3G61150.1	KRG93211	AT3G27580.1	21798944
AT3G61150.1	KRG94078	AT3G27580.1	21798944
AT3G61150.1	KRH07149	AT3G27580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00641	Soybean	nucleus	96.1	95.86
Os09t0526300-00	Rice	nucleus	13.9	87.02
VIT_15s0048g02000.t01	Wine grape	nucleus	83.66	84.59
Solyc01g091630.2.1	Tomato	nucleus	81.83	81.73
PGSC0003DMT400071377	Potato	nucleus	81.59	81.49
KRH48236	Soybean	nucleus	82.32	81.42
KRH65144	Soybean	nucleus	82.93	81.34
PGSC0003DMT400019986	Potato	nucleus	72.68	73.67
CDY18903	Canola	nucleus	61.22	71.21
CDX74762	Canola	nucleus	61.34	71.05
AT4G00730.1	Thale cress	nucleus	68.66	70.2
CDY51143	Canola	nucleus	67.56	70.13
Bra037355.1-P	Field mustard	nucleus	67.56	70.13
CDX74347	Canola	nucleus	67.32	69.61
CDY07201	Canola	nucleus	66.83	69.54
CDX91894	Canola	nucleus	67.32	69.52
GSMUA_Achr1P18760_001	Banana	nucleus	63.78	69.18
CDX67855	Canola	nucleus	65.12	68.46
CDY45684	Canola	nucleus	65.12	68.11
Bra003439.1-P	Field mustard	nucleus	65.0	67.9
KRH35356	Soybean	nucleus	62.8	67.32
Bra004934.1-P	Field mustard	nucleus	64.39	67.18
KRG91457	Soybean	nucleus	63.17	66.67
AT3G61150.1	Thale cress	nucleus	64.88	65.84
Os02t0674800-01	Rice	nucleus	64.51	65.8
HORVU6Hr1G065300.3	Barley	nucleus	63.78	65.38
TraesCS6A01G255800.1	Wheat	nucleus	63.54	64.8
TraesCS6B01G269700.1	Wheat	nucleus	63.41	64.68
TraesCS6D01G237000.1	Wheat	nucleus	63.17	64.43
Zm00001d040090_P002	Maize	nucleus	62.8	64.13
EES02604	Sorghum	nucleus	63.66	64.05
HORVU0Hr1G013510.1	Barley	cytosol	10.73	63.31
GSMUA_Achr3P12410_001	Banana	nucleus	56.71	62.67
Os04t0569100-01	Rice	nucleus	59.51	60.55
KRH13175	Soybean	cytosol	12.93	59.89
EER99222	Sorghum	nucleus	63.29	59.52
KRH38560	Soybean	nucleus	55.73	58.89
KRH09109	Soybean	plastid	55.49	58.71
HORVU5Hr1G080700.2	Barley	nucleus	60.98	58.62
Zm00001d040091_P001	Maize	nucleus	18.54	58.24
TraesCS5D01G320600.1	Wheat	nucleus	60.12	58.07
TraesCS5B01G315100.2	Wheat	nucleus	60.12	58.0
TraesCS5A01G314400.2	Wheat	nucleus	59.88	57.83
KRH56105	Soybean	nucleus	51.22	57.61
KXG26935	Sorghum	nucleus	56.1	57.36
Zm00001d021236_P004	Maize	nucleus	62.32	56.59
KRH25398	Soybean	plastid	51.59	55.58
KRH22554	Soybean	nucleus	51.83	54.42
KRH26803	Soybean	nucleus	51.71	54.29
KRH77881	Soybean	nucleus	47.32	53.08
TraesCS2D01G398600.1	Wheat	nucleus	50.37	52.68
TraesCS2B01G419200.1	Wheat	nucleus	50.37	52.61
KRH27601	Soybean	nucleus	46.95	52.6
Zm00001d026088_P002	Maize	nucleus	52.93	52.04
HORVU2Hr1G095210.1	Barley	nucleus	49.39	51.92
TraesCS2A01G401200.3	Wheat	nucleus	50.0	51.25
KRH38939	Soybean	nucleus	45.0	51.11
KRH09477	Soybean	nucleus	44.63	50.97
KRG91238	Soybean	nucleus	43.41	48.7
KRH60596	Soybean	nucleus	41.83	48.11
KRH41898	Soybean	nucleus	42.07	47.85
KRH44348	Soybean	nucleus	42.32	46.39
KRH47277	Soybean	nucleus	42.07	45.94
KRH09884	Soybean	plastid	41.71	45.54
KRH23432	Soybean	plastid	42.2	45.41
KRH35579	Soybean	nucleus	42.56	44.86
HORVU7Hr1G036950.2	Barley	cytosol	10.0	44.81
KRH74360	Soybean	nucleus	41.46	43.09
HORVU4Hr1G062510.2	Barley	cytosol	14.51	42.96
KRH39579	Soybean	nucleus	40.98	42.0
HORVU3Hr1G108430.1	Barley	cytosol	15.61	38.44
KRH36827	Soybean	nucleus	32.68	37.8
KRH11810	Soybean	nucleus	32.8	37.73
KRH36826	Soybean	nucleus	30.0	34.5
KRH22254	Soybean	cytosol	21.95	33.64
KRH42428	Soybean	nucleus	28.29	30.65
KRH27078	Soybean	extracellular, golgi, peroxisome	11.83	29.39
KRH42429	Soybean	cytosol	25.0	28.08

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100783614	MapMan:15.5.3.3	UniProt:A0A0K2CTQ2	EMBL:ACUP02006041	ncoils:Coil
EnsemblPlantsGene:GLYMA_09G265200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	UniProt:I1L6R2	InterPro:IPR001356	InterPro:IPR002913	ProteinID:KRH40538.1
EnsemblPlants:KRH40539	ProteinID:KRH40539	ProteinID:KRH40539.1	ProteinID:KRH40540.1	EMBL:KT031166	PFAM:PF00046
PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF487
SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0001ED190F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:48284069..48290917

Molecular Weight (calculated)

89616.9 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.291

Length

820 amino acids

Sequence
(BLAST)

001: MSFGGFLETK QSGGGGGRIV ADIPYSNNSN NIMPSSAISQ PRLATPTLVK SMFNSPGLSL ALQSDIDGKR DVNRLMPENF EQNGLRRNRE EEHESRSGSD
101: NMDGGSGDDF DAADNPPRKK RYHRHTPQQI QELESLFKEC PHPDEKQRLE LSRRLNLETR QVKFWFQNRR TQMKTQLERH ENSLLRQEND KLRAENMSMR
201: EAMRNPICTN CGGPAMIGEI SLEEQHLRIE NARLKDELDR VCALAGKFLG RPISSLTGSI GPPLPNSSLE LGVGSNGFGG LSTVPSTMPD FGVGISSPLA
301: MVSPSSTRPT TTATTTLVTP PSGFDNRSIE RSIVLELALA AMDELVKMAQ TDEPLWIRSL EGGREILNHD EYTRTITPCI GLRPNGFVTE ASRQTGMVII
401: NSLALVETLM DSNRWSEMFP CMIARTSTAE VISNGINGTR NGALQLMHAE LQVLSPLVPV REVNFLRFCK QHAEGLWAVV DVSIDTIRDT SGAPTFVNCR
501: RLPSGCVVQD MPNGYSKVTW VEHAEYDESQ IHQLYRPLLS SGMGFGAQRW VATLQRQCEC LAILISSAVP SREHSAISSG GRRSMLKLAQ RMTNNFCAGV
601: CASTVHKWNK LNAGNVGEDV RVMTRKSVDD PGEPPGIVLS AATSVWLPVS PQRLFDFLRD ERLRSEWDIL SNGGPMQEMA HIAKGQDHAN CVSLLRASAI
701: NANQSSMLIL QETCTDASGS LVVYAPVDIP AMHVVMNGGD SAYVALLPSG FAIVPDGSVE ENGGASQQRA ASGGCLLTVA FQILVNSLPT AKLTVESVET
801: VNNLISCTVQ KIKSALHCES

Best Arabidopsis Sequence Match ( AT4G00730.1 )
(BLAST)

001: MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA MAQAAAAASL FSPPLTKSVY ASSGLSLALE QPERGTNRGE ASMRNNNNVG GGGDTFDGSV
101: NRRSREEEHE SRSGSDNVEG ISGEDQDAAD KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR LCLETRQVKF WFQNRRTQMK TQLERHENAL
201: LRQENDKLRA ENMSIREAMR NPICTNCGGP AMLGDVSLEE HHLRIENARL KDELDRVCNL TGKFLGHHHN HHYNSSLELA VGTNNNGGHF AFPPDFGGGG
301: GCLPPQQQQS TVINGIDQKS VLLELALTAM DELVKLAQSE EPLWVKSLDG ERDELNQDEY MRTFSSTKPT GLATEASRTS GMVIINSLAL VETLMDSNRW
401: TEMFPCNVAR ATTTDVISGG MAGTINGALQ LMNAELQVLS PLVPVRNVNF LRFCKQHAEG VWAVVDVSID PVRENSGGAP VIRRLPSGCV VQDVSNGYSK
501: VTWVEHAEYD ENQIHQLYRP LLRSGLGFGS QRWLATLQRQ CECLAILISS SVTSHDNTSI TPGGRKSMLK LAQRMTFNFC SGISAPSVHN WSKLTVGNVD
601: PDVRVMTRKS VDDPGEPPGI VLSAATSVWL PAAPQRLYDF LRNERMRCEW DILSNGGPMQ EMAHITKGQD QGVSLLRSNA MNANQSSMLI LQETCIDASG
701: ALVVYAPVDI PAMHVVMNGG DSSYVALLPS GFAVLPDGGI DGGGSGDGDQ RPVGGGSLLT VAFQILVNNL PTAKLTVESV ETVNNLISCT VQKIRAALQC
801: ES

Arabidopsis Description

ANL2Homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.