CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
vacuole 1
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92082
KRH03466
KRH34704
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27580.1	KRH03466	AT3G47620.1	21798944
AT3G27580.1	KRH54542	AT3G47620.1	21798944
AT3G27580.1	KRH56919	AT3G47620.1	21798944
AT3G27580.1	KRH63357	AT3G47620.1	21798944
AT3G27580.1	KRG92082	AT5G04510.1	16973627
AT3G27580.1	KRH34704	AT5G04510.1	16973627

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07149	Soybean	cytosol	96.51	96.51
KRG93211	Soybean	cytosol	78.29	80.72
GSMUA_Achr5P00910_001	Banana	extracellular	32.33	72.08
Solyc02g093360.2.1	Tomato	cytosol	67.99	68.64
PGSC0003DMT400032816	Potato	cytosol	68.15	68.15
VIT_14s0066g00460.t01	Wine grape	cytosol, plastid	71.16	66.22
CDX83710	Canola	cytosol, plastid	56.1	64.48
Solyc02g067830.2.1	Tomato	cytosol	63.07	63.48
AT3G27580.1	Thale cress	cytosol, plastid	57.84	63.15
PGSC0003DMT400017808	Potato	cytosol, plastid	64.82	61.41
Bra025288.1-P	Field mustard	cytosol	56.1	60.2
CDY13725	Canola	plastid	54.36	59.55
KRH36626	Soybean	cytosol	57.21	59.38
KRH11623	Soybean	cytosol	55.15	58.88
KRH13830	Soybean	cytosol	45.32	49.65
KRH44814	Soybean	cytosol	43.74	49.29
KRH26592	Soybean	nucleus	35.34	49.23
KRH43612	Soybean	cytosol	45.01	48.46
KRH34744	Soybean	cytosol	31.7	48.31
KRH30493	Soybean	cytosol, plastid	33.76	48.3
KRH25188	Soybean	nucleus, plastid	32.96	47.71
KRG92038	Soybean	cytosol	31.85	47.63
KRH56632	Soybean	plastid	35.82	46.31
KRH03726	Soybean	plastid	35.82	46.12
KRH21098	Soybean	cytosol, plastid	32.01	44.69
KRH22717	Soybean	nucleus	35.18	44.67
KRH63005	Soybean	nucleus	34.39	44.47
KRH48818	Soybean	cytosol	53.25	44.04
KRH01064	Soybean	cytosol	53.57	44.01
KRH66511	Soybean	nucleus	53.09	43.91
KRH40174	Soybean	cytosol	53.09	43.73
KRH59216	Soybean	cytosol	31.85	43.7
KRH43840	Soybean	cytosol	30.59	41.77
KRH13630	Soybean	nucleus	31.22	41.21
KRH32674	Soybean	cytosol	47.23	34.53
KRH30833	Soybean	cytosol	47.07	34.3
KRH56412	Soybean	cytosol	45.17	34.13
KRH62499	Soybean	cytosol	44.53	33.98
KRG96169	Soybean	cytosol	46.43	33.76
KRH23770	Soybean	cytosol	43.26	33.58
KRH67882	Soybean	cytosol	46.28	33.52

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100802402	MapMan:18.4.6.5	Gene3D:3.30.200.20	EMBL:ACUP02011713	EnsemblPlantsGene:GLYMA_19G060500
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0035556	InterPro:IPR000719	UniProt:K7MWU9	ProteinID:KRG94077.1	EnsemblPlants:KRG94078	ProteinID:KRG94078
ProteinID:KRG94078.1	InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24351
PANTHER:PTHR24351:SF86	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002951F96
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:11998383..12002749

Molecular Weight (calculated)

69934.9 Da

IEP (calculated)

7.830

GRAVY (calculated)

-0.413

Length

631 amino acids

Sequence
(BLAST)

001: MGSPVNGVYS SSEVHNSVSV VDHDPPSTSG IPRSSRPPLR APRNYGASSS QKHSYQEADN VERDRVPNMD KQYYDANGKS DNASLNKAVE SCLGKNISTM
101: ETKLSIKQPL DVFKNCDSGG VLESDNCKLG SSKGVVDQTK SYCQSEITFC PSPQNSFYSE AKESFANTGG SECVSVDKSV ESGEVTNSCE FNESRKTSIC
201: RGSTGSDVSD ESSTSSLSTA LYKPHKANDI RWEAIQAIRV RDGVLEMRHF RLLKKLGCGD IGSVYLAELS GTRTCFAMKV MNKTELASRK KLVRSQTERE
301: ILQSLDHPFL PTLYTHFETE TFSCLVMEFC PGGDLHALRQ RQPGKYFSEI AARFYVAEVL LALEYLHMLG VIYRDLKPEN VLVREDGHIM LSDFDLSLRC
401: AVSPTLVKSS NSSLETKSSG YCIQPACIEP TCVIQPDCIQ PSCFTPRFFS SKSKKEKKSK PKNDVQNQVT PLPELIAEPT NARSMSFVGT HEYLAPEIIK
501: GEGHGSAVDW WTFGIFLYEL LFGRTPFKGS ANRATLFNVV GQPLKFPESP TVSFAARDLI RGLLVKEPQN RLAYRRGATE IKQHPFFHNV NWALIRCANP
601: PEVPRQAMKA LAAEKVPGVK PSGNYLDIDF F

Best Arabidopsis Sequence Match ( AT3G27580.1 )
(BLAST)

001: MDSSSSVVYV GSSSKSRNFQ SKSKGSITSF SIDSRGTKKS MKTLLIPEPE PTSPEVIESS VSSVSAESET PISIIRKKKQ SEPRFYSSPT NTFYTEAKQS
101: FTNTEFSECA SISTIGIGGI DLEKNGVMIY RGSIGSDVSD ESSSSGLSNA AYKPHRDNND KRWVAIQEVR SRVGSSLEAK DFKLIKKLGG GDIGNVYLAE
201: LIGTGVSFAV KVMEKAAIAA RKKLVRAQTE KEILQSLDHP FLPTLYSHFE TEMNSCLVME FCPGGDLHSL RQKQRGKYFP EQAARFYVAE VLLAMEYLHM
301: LGIIYRDLKP ENVLVREDGH IMLSDFDLSL RCAVSPTLVR FAAITLESKS SSYCIQPTCV DQSSCIVQPD CIQPVCFTPR FLSKGKHRKK SNDMSRQIRP
401: LPELIAEPTS ARSMSFVGTH EYLAPEIIKG EGHGSAVDWW TFGIFLYELL FGITPFRGGD NRATLFNVVG QPLRFPEHPN VSFAARDLIR GLLVKEPQHR
501: LAYRRGATEI KQHPFFQSVN WALIRCTSPP QIPQPVKPMD QAHSVRHGFS QGHGHVGYDK PPTVDVKPSG NYLEIDFF

Arabidopsis Description

D6PKL3Serine/threonine-protein kinase D6PKL3 [Source:UniProtKB/Swiss-Prot;Acc:Q05999]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.