Factsheet for PGSC0003DMT400017808

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
vacuole 1
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400043552
PGSC0003DMT400070360

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27580.1	PGSC0003DMT400001613	AT3G47620.1	21798944
AT3G27580.1	PGSC0003DMT400043552	AT5G04510.1	16973627
AT3G27580.1	PGSC0003DMT400070360	AT5G04510.1	16973627

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067830.2.1	Tomato	cytosol	92.34	98.09
PGSC0003DMT400032816	Potato	cytosol	74.47	78.61
GSMUA_Achr5P00910_001	Banana	extracellular	30.03	70.67
VIT_14s0066g00460.t01	Wine grape	cytosol, plastid	68.77	67.55
KRG93211	Soybean	cytosol	60.36	65.69
CDX83710	Canola	cytosol, plastid	54.05	65.57
KRG94078	Soybean	cytosol, plastid	61.41	64.82
KRH07149	Soybean	cytosol	61.41	64.82
AT3G27580.1	Thale cress	cytosol, plastid	54.2	62.46
PGSC0003DMT400025008	Potato	cytosol	41.74	61.78
Bra025288.1-P	Field mustard	cytosol	53.75	60.88
CDY13725	Canola	plastid	52.4	60.59
PGSC0003DMT400057021	Potato	plastid	54.5	60.1
PGSC0003DMT400050818	Potato	cytosol	53.6	58.81
PGSC0003DMT400022397	Potato	plastid	53.9	58.56
PGSC0003DMT400003557	Potato	cytosol, plastid	42.94	55.0
PGSC0003DMT400053292	Potato	cytosol, plastid	34.53	49.57
PGSC0003DMT400068252	Potato	nucleus	33.78	47.57
PGSC0003DMT400050201	Potato	cytosol	31.98	46.2
PGSC0003DMT400067034	Potato	cytosol	48.35	46.0
PGSC0003DMT400068494	Potato	cytosol	45.65	43.24
PGSC0003DMT400079838	Potato	nucleus	28.53	39.5
PGSC0003DMT400068291	Potato	cytosol	44.89	35.68
PGSC0003DMT400018337	Potato	cytosol	44.14	34.47
PGSC0003DMT400006862	Potato	cytosol	43.24	28.24
PGSC0003DMT400072395	Potato	nucleus	42.04	27.86

Protein Annotations

EntrezGene:102579017	MapMan:18.4.6.5	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
UniProt:M1A9H6	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400006916	PGSC:PGSC0003DMG400006916	EnsemblPlants:PGSC0003DMT400017808	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24351	PANTHER:PTHR24351:SF86	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002961646	RefSeq:XP_006357202.2	SEG:seg	:	:

Description

Stpk1 protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400006916]

Coordinates

chr2:+:26547774..26552711

Molecular Weight (calculated)

73726.1 Da

IEP (calculated)

7.711

GRAVY (calculated)

-0.435

Length

666 amino acids

Sequence
(BLAST)

001: MESLVEGISS LPNSRTPFTA IKGNTSSASR TSRPPHPTSM RQSRCKELSF DPIAIDIGSK PTDTPTGSVA ASKSSHKSSS DRIKRDDVSD SRRHYSESTK
101: GKECQRIEDA LDQPSEECSL DRVLIFETKS SIKDPLHDNK HTTSGGYVER KDFMLHAVAR GDADLLNGQL TSQSGISYCP SPQNSFYTAT QYIEPKQSFT
201: TTEVISECAS SMGKSGGSGD VSNLCDISDS RKTSFYRGST GSDISDESSS TSVGSTMYKP HQANDTRWDA IQAIRSIDGT LGFNHFRLLK RLGGGDIGNV
301: FLAELIGTRD YFAMKVMDNA ALESRKKTVR AQTEREILQS LDHPFLPTLY SHFETDKFSC LVMEFCPGGD LHALRQRQPG KFFPEHAARF YVAEILLALE
401: YLHMLGIIYR DLKPENVLVR EDGHIMLSDF DLSLRCAVSP TLVKSSNSSL ESKTSSYCVQ PACIEPSCVI QPACFSPRFL RPKKGKKTKQ KSEMHNQVSP
501: LPELMAEPTN ARSMSFVGTH EYLAPEIIKG EGHGSAVDWW TFGIFLYELL FGQTPFKGAG NRATLFNVVG QPLRFPSSPS VSFAARDLIR GLLVKEPQHR
601: LAYRRGATEI KQHPFFQSVN WALIRCASPP DVPKAFVLHD APRAPATTGP GVDVKPTDNY FEIDFF

Best Arabidopsis Sequence Match ( AT3G27580.1 )
(BLAST)

001: MDSSSSVVYV GSSSKSRNFQ SKSKGSITSF SIDSRGTKKS MKTLLIPEPE PTSPEVIESS VSSVSAESET PISIIRKKKQ SEPRFYSSPT NTFYTEAKQS
101: FTNTEFSECA SISTIGIGGI DLEKNGVMIY RGSIGSDVSD ESSSSGLSNA AYKPHRDNND KRWVAIQEVR SRVGSSLEAK DFKLIKKLGG GDIGNVYLAE
201: LIGTGVSFAV KVMEKAAIAA RKKLVRAQTE KEILQSLDHP FLPTLYSHFE TEMNSCLVME FCPGGDLHSL RQKQRGKYFP EQAARFYVAE VLLAMEYLHM
301: LGIIYRDLKP ENVLVREDGH IMLSDFDLSL RCAVSPTLVR FAAITLESKS SSYCIQPTCV DQSSCIVQPD CIQPVCFTPR FLSKGKHRKK SNDMSRQIRP
401: LPELIAEPTS ARSMSFVGTH EYLAPEIIKG EGHGSAVDWW TFGIFLYELL FGITPFRGGD NRATLFNVVG QPLRFPEHPN VSFAARDLIR GLLVKEPQHR
501: LAYRRGATEI KQHPFFQSVN WALIRCTSPP QIPQPVKPMD QAHSVRHGFS QGHGHVGYDK PPTVDVKPSG NYLEIDFF

Arabidopsis Description

D6PKL3Serine/threonine-protein kinase D6PKL3 [Source:UniProtKB/Swiss-Prot;Acc:Q05999]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.