Factsheet for PGSC0003DMT400025008

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, vacuole
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043552
PGSC0003DMT400070360

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16440.1	PGSC0003DMT400043552	AT5G04510.1	16973627
AT1G16440.1	PGSC0003DMT400070360	AT5G04510.1	16973627

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g017390.1.1	Tomato	cytosol	98.44	94.86
VIT_19s0085g01140.t01	Wine grape	cytosol	81.78	83.45
Bra026056.1-P	Field mustard	cytosol	73.11	74.27
CDY33329	Canola	cytosol	72.67	67.15
AT1G16440.1	Thale cress	cytosol	72.22	65.13
CDY35093	Canola	cytosol	73.11	64.51
AT1G79250.2	Thale cress	cytosol	76.67	62.16
GSMUA_Achr2P19230_001	Banana	cytosol	64.22	61.49
KRH44814	Soybean	cytosol	75.11	60.36
Zm00001d039282_P001	Maize	cytosol	66.89	60.2
Os01t0233800-01	Rice	plasma membrane	71.11	60.15
KRH13830	Soybean	cytosol	76.67	59.9
KRH43612	Soybean	cytosol	76.89	59.04
HORVU5Hr1G108690.2	Barley	cytosol	66.44	58.28
TraesCS5D01G460900.1	Wheat	cytosol, mitochondrion	66.44	57.72
EER99999	Sorghum	cytosol, plastid	68.67	57.43
Zm00001d037782_P001	Maize	cytosol	70.44	57.43
TraesCS5B01G459300.1	Wheat	cytosol	66.0	57.34
AT3G12690.2	Thale cress	cytosol	73.33	57.19
CDY42166	Canola	cytosol, plastid	72.22	57.12
CDY08414	Canola	cytosol, plastid	72.22	56.92
Bra034743.1-P	Field mustard	cytosol, plastid	72.22	56.92
HORVU1Hr1G031420.1	Barley	cytosol	69.56	56.4
Bra038744.1-P	Field mustard	cytosol	71.56	56.29
CDY50542	Canola	cytosol	71.33	56.12
OQU77686	Sorghum	cytosol	70.22	56.03
TraesCS1B01G152700.1	Wheat	cytosol	68.89	55.96
TraesCS1A01G133200.1	Wheat	cytosol	68.89	55.96
Os05t0237400-01	Rice	plasma membrane	70.89	55.57
Zm00001d015925_P001	Maize	cytosol	64.0	55.07
PGSC0003DMT400003557	Potato	cytosol, plastid	62.22	53.85
TraesCS5A01G450900.1	Wheat	plastid	67.33	53.25
OQU84819	Sorghum	cytosol	62.89	53.1
TraesCS3A01G157100.1	Wheat	cytosol	69.56	52.6
TraesCS3B01G183500.2	Wheat	cytosol	69.78	52.16
TraesCS3D01G164700.1	Wheat	cytosol	69.78	52.07
HORVU3Hr1G031930.2	Barley	cytosol	69.56	51.91
Bra008404.1-P	Field mustard	nucleus	71.78	50.16
TraesCS1D01G124200.2	Wheat	cytosol	68.89	49.84
PGSC0003DMT400050818	Potato	cytosol	65.78	48.76
PGSC0003DMT400057021	Potato	plastid	65.33	48.68
PGSC0003DMT400022397	Potato	plastid	64.67	47.47
PGSC0003DMT400068252	Potato	nucleus	48.44	46.09
PGSC0003DMT400053292	Potato	cytosol, plastid	47.11	45.69
PGSC0003DMT400032816	Potato	cytosol	63.56	45.32
PGSC0003DMT400050201	Potato	cytosol	45.56	44.47
PGSC0003DMT400017808	Potato	cytosol, plastid	61.78	41.74
GSMUA_Achr5P06950_001	Banana	cytosol, mitochondrion	61.11	40.26
PGSC0003DMT400067034	Potato	cytosol	61.33	39.43
PGSC0003DMT400079838	Potato	nucleus	39.78	37.21
PGSC0003DMT400068494	Potato	cytosol	57.33	36.7
PGSC0003DMT400068291	Potato	cytosol	54.89	29.47
PGSC0003DMT400018337	Potato	cytosol	55.33	29.19
PGSC0003DMT400072395	Potato	nucleus	56.0	25.07
PGSC0003DMT400006862	Potato	cytosol	56.44	24.9

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.6.5	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	UniProt:M1AKW4	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400009661	PGSC:PGSC0003DMG400009661	EnsemblPlants:PGSC0003DMT400025008
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24351	PANTHER:PTHR24351:SF55	InterPro:Prot_kinase_dom	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000295F4FC	SEG:seg	:	:

Description

Protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400009661]

Coordinates

chr12:+:11022898..11024364

Molecular Weight (calculated)

49919.3 Da

IEP (calculated)

7.454

GRAVY (calculated)

-0.356

Length

450 amino acids

Sequence
(BLAST)

001: MSLEETFHPS KVSESTESSS SSTTPLKPHT GGDVRWDAIN SATGRGGPPL NLSNFRLLKR LGYGDIGSVY LVELRGTNAF FAMKVMDKGS LASRNKLLRA
101: QTEREILSLL DHPFLPTLYS HFETDKFYCL VMEFCSGGNL HTLRQKQPNK HFTEEASRFY ASEVLLALEY LHMLGIVYRD LKPENVLVRD EGHIMLSDFD
201: LSLRCSVNPT LVKSSSVHGG GGNPSSGSGI LDNDNAVQGC IQPSTFFPRN ILPTKKNRKS KSDFGLFVGG SLPELMAEPT NVRSMSFVGT HEYLAPEIIR
301: GEGHGSAVDW WTFGIFLYEL LHGTTPFKGA GNRATLFNVV GQPLRFPETP QVSAIARDLI RGLLVKEPHK RIAYKRGATE IKQHPFFEGV NWALVRSAVP
401: PSIPEPVDFA QYSSKEASAP CSDKKMPDTE SHDKSKNTSN DSSYIDFEYF

Best Arabidopsis Sequence Match ( AT1G79250.1 )
(BLAST)

001: MLTKPGKKLD SSESTHHTTS SNYPPLDIVH QTPQPRKEMQ QKPLFDPKKM DNLIKPEPAG FTNHHRPNPS PKIPSSPGSN MTESQSNLNT KPNNNNSNNN
101: SNMSSRSNSI ESTSSNPSKP HTGGDIRWDA VNTLTSKGVQ LGISDFRLLK RLGYGDIGSV YLVELRGTIT YFAMKVMDKA SLASRNKLLR AQTEREILSQ
201: LDHPFLPTLY SHFETDKFYC LVMEFCGGGN LYSLRQKQPN KCFTEDAARF FASEVLLALE YLHMLGIVYR DLKPENVLVR DDGHIMLSDF DLSLRCSVSP
301: TLVKSSSVHA AGGGSGSSRP VGLIDEDAAV QGCIQPSTFF PRILQSSKKN RKAKSDFGLF VNGSMPELMA EPTNVKSMSF VGTHEYLAPE IIRGEGHGSA
401: VDWWTFGIFI YELLYGATPF KGQGNRATLH NVIGQALRFP EVPHVSSAAR DLIKGLLVKE PQKRIAYKRG ATEIKQHPFF EGVNWALIRS ATPPHVPEPV
501: DFSCYASKDK ESMAAVDGGG KKNNNGAGGG CSTGGGDNKP NGDCNDPDYI DFEYF

Arabidopsis Description

AGC1-7Serine/threonine-protein kinase AGC1-7 [Source:UniProtKB/Swiss-Prot;Acc:Q1PFB9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.