Factsheet for PGSC0003DMT400053292

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
vacuole 1
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043552
PGSC0003DMT400070360

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26700.1	PGSC0003DMT400043552	AT5G04510.1	16973627
AT2G26700.1	PGSC0003DMT400070360	AT5G04510.1	16973627

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006690.1.1	Tomato	nucleus, plastid	97.41	97.84
VIT_11s0016g04910.t01	Wine grape	nucleus, plastid	73.92	72.98
KRH56632	Soybean	plastid	70.91	67.42
GSMUA_Achr10P...	Banana	nucleus	58.84	66.42
KRH03726	Soybean	plastid	70.04	66.33
GSMUA_Achr7P09970_001	Banana	nucleus	58.62	64.3
KRH63005	Soybean	nucleus	65.95	62.7
CDY48186	Canola	cytosol	61.85	58.81
EES00213	Sorghum	cytosol, plastid	61.85	58.1
Os01t0174700-01	Rice	cytosol	60.34	56.8
TraesCS3B01G147300.1	Wheat	cytosol	58.84	56.29
Zm00001d039654_P001	Maize	cytosol	60.13	56.02
TraesCS3D01G129100.1	Wheat	cytosol	58.62	55.97
TraesCS3A01G128200.1	Wheat	cytosol	58.41	55.88
AT2G26700.1	Thale cress	cytosol, plastid	63.15	55.81
Bra034312.1-P	Field mustard	cytosol	62.28	54.63
HORVU3Hr1G024030.1	Barley	cytosol	58.84	51.61
PGSC0003DMT400025008	Potato	cytosol	45.69	47.11
PGSC0003DMT400068252	Potato	nucleus	43.32	42.49
PGSC0003DMT400003557	Potato	cytosol, plastid	47.41	42.31
PGSC0003DMT400050201	Potato	cytosol	41.16	41.43
PGSC0003DMT400057021	Potato	plastid	50.43	38.74
PGSC0003DMT400050818	Potato	cytosol	50.22	38.39
PGSC0003DMT400079838	Potato	nucleus	39.66	38.25
PGSC0003DMT400022397	Potato	plastid	50.22	38.01
PGSC0003DMT400032816	Potato	cytosol	49.78	36.61
PGSC0003DMT400017808	Potato	cytosol, plastid	49.57	34.53
CDX77055	Canola	cytosol	61.21	33.06
PGSC0003DMT400067034	Potato	cytosol	48.71	32.29
PGSC0003DMT400068494	Potato	cytosol	47.41	31.29
PGSC0003DMT400068291	Potato	cytosol	47.2	26.13
PGSC0003DMT400018337	Potato	cytosol	47.41	25.79
PGSC0003DMT400072395	Potato	nucleus	46.55	21.49
PGSC0003DMT400006862	Potato	cytosol	46.98	21.37

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102598471	MapMan:11.2.4.1.2	MapMan:18.4.6.5	Gene3D:3.30.200.20	ncoils:Coil
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009790	GO:GO:0009791	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0048825	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1BUR5	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400020682
PGSC:PGSC0003DMG400020682	EnsemblPlants:PGSC0003DMT400053292	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24351	PANTHER:PTHR24351:SF70
InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000296B75F	RefSeq:XP_006364909.1
SEG:seg	:	:	:	:	:

Description

Putative serine/threonine protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400020682]

Coordinates

chr12:+:5270186..5272962

Molecular Weight (calculated)

53065.0 Da

IEP (calculated)

9.416

GRAVY (calculated)

-0.413

Length

464 amino acids

Sequence
(BLAST)

001: MATTNRDESD KDSTASSSIT MPESSRRSWM SSTNLSSFSS RRSSISLCNE NPYFSNSHKP HKSNQIPWEL IRRIRVESGQ IKLEHFRLLR RVGGGDIGSV
101: YLCEIRNPVV GLPQCFYAMK VVDREAVEIR KKLQRAEMEK EILGIIDHPF LPTLYAQFEA SHYSCLVMEY CPGGDLHAVR QRQPGKRFSI SSAKFYAAEI
201: LVALEYLHMM GIVYRDLKPE NVLVRSDGHI MLSDFDLSFK CDEVVPTLVK SKTTKSITKT PRNSYCAMPI QPVLSCFLSR KTEQNHENQE QNQEIVAEPI
301: NARSKSFVGT HEYLAPEVIS GQGHGSAVDW WTLGVFLYEL IFGTTPFKGE NNEKTLVNIL KKPLTFPRIA ISSSREYEEM VKVQDLICRL LVKNPKKRIG
401: SLQGSVEIKK HEFFKGVNWA LIRSIKPPEV PNDLVKMRGV RGVPKLSKKQ REEPYQIPQY FDYF

Best Arabidopsis Sequence Match ( AT2G26700.1 )
(BLAST)

001: MANSSIFYKD NESDYESSTV GPDSSRRTSW LSSSFTASPS CSSISHLSNH GLNSYNQSKP HKANQVAWEA MARLRRCCGR AVGLEHFRLL KRLGSGDIGS
101: VYLCQIRGSP ETAFYAMKVV DKEAVAVKKK LGRAEMEKKI LGMLDHPFCP TLYAAFEASH YSFLVMEYCP GGDLYAVRLR QPSKRFTISS TRFYAAETLV
201: ALEYLHMMGI VYRDLKPENV LIREDGHVML SDFDLSFKCD VVPQFLSDND RDRGHQEDDD DISIRRKCST PSCTTTPLNP VISCFSPTSS RRRKKNVVTT
301: TIHENAAGTS DSVKSNDVSR TFSRSPSSCS RVSNGLRDIS GGCPSIFAEP INARSKSFVG THEYLAPEVI SGQGHGSAVD WWTYGIFLYE MIFGRTPFKG
401: DNNEKTLVNI LKAPLTFPKV IVNSPKEYED MVNAQDLIIK LLVKNPKKRL GSLKGSIEIK RHEFFEGVNW ALIRSIKPPW VPKEETSHKT KGDNRSVNYY
501: LPPRFMMSRK ERNEPYHVSN YFDYF

Arabidopsis Description

PID2Protein kinase PINOID 2 [Source:UniProtKB/Swiss-Prot;Acc:Q64FQ2]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.