Factsheet for VIT_11s0016g04910.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0074g00100.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26700.1	VIT_13s0074g00100.t01	AT5G04510.1	16973627

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56632	Soybean	plastid	80.0	77.05
KRH03726	Soybean	plastid	79.15	75.92
Solyc12g006690.1.1	Tomato	nucleus, plastid	72.98	74.24
PGSC0003DMT400053292	Potato	cytosol, plastid	72.98	73.92
KRH63005	Soybean	nucleus	74.68	71.93
GSMUA_Achr7P09970_001	Banana	nucleus	64.04	71.16
GSMUA_Achr10P...	Banana	nucleus	61.7	70.56
Os01t0174700-01	Rice	cytosol	65.53	62.47
EES00213	Sorghum	cytosol, plastid	65.53	62.35
CDY48186	Canola	cytosol	63.4	61.07
Zm00001d039654_P001	Maize	cytosol	64.68	61.04
TraesCS3B01G147300.1	Wheat	cytosol	62.98	61.03
TraesCS3A01G128200.1	Wheat	cytosol	62.77	60.82
TraesCS3D01G129100.1	Wheat	cytosol	62.55	60.49
AT2G26700.1	Thale cress	cytosol, plastid	64.89	58.1
Bra034312.1-P	Field mustard	cytosol	63.83	56.71
HORVU3Hr1G024030.1	Barley	cytosol	62.98	55.95
VIT_13s0074g00730.t01	Wine grape	cytosol	37.02	50.29
VIT_19s0085g01140.t01	Wine grape	cytosol	45.53	48.53
VIT_10s0003g04320.t01	Wine grape	cytosol, plastid	46.17	48.12
VIT_06s0061g01560.t01	Wine grape	nucleus	44.47	46.44
VIT_19s0027g00020.t01	Wine grape	nucleus, plastid	40.64	40.3
VIT_14s0066g02140.t01	Wine grape	cytosol	45.96	40.15
VIT_19s0015g00770.t01	Wine grape	extracellular	50.64	38.95
VIT_10s0116g00440.t01	Wine grape	plastid	50.64	38.39
CDX77055	Canola	cytosol	62.77	34.34
VIT_14s0066g00460.t01	Wine grape	cytosol, plastid	48.94	33.92
VIT_15s0021g01540.t01	Wine grape	cytosol	49.15	32.44
VIT_06s0061g01540.t01	Wine grape	cytosol	47.87	25.6
VIT_08s0007g03600.t01	Wine grape	cytosol	46.38	25.23

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100242344	wikigene:100242344	MapMan:11.2.4.1.2	MapMan:18.4.6.5	Gene3D:3.30.200.20
ProteinID:CCB51567	ProteinID:CCB51567.1	ncoils:Coil	UniProt:F6HH71	EMBL:FN595756	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005886
GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0035556
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100242344	wikigene:LOC100242344	PFAM:PF00069	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24351	PANTHER:PTHR24351:SF70	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI00019841C9	ArrayExpress:VIT_11s0016g04910	EnsemblPlantsGene:VIT_11s0016g04910	EnsemblPlants:VIT_11s0016g04910.t01	RefSeq:XP_002285044
RefSeq:XP_002285044.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:4223683..4225262

Molecular Weight (calculated)

52770.6 Da

IEP (calculated)

9.623

GRAVY (calculated)

-0.377

Length

470 amino acids

Sequence
(BLAST)

001: MATVTRDDSD YDSSCSSITV PDSSRSWMSN LSFGSRSSVS VCSSADTSHK PHKANQAAWE AMKRLRGEKG RVGLDHFRML RRLGSGDIGN VYLCQIRNPV
101: VGLPQSFYAM KVVDREALAI RNKLQRAEME KEILGILDHP FLPTLYAEFD ASHYSCLVME FCPGGDLHAA RQRQPGKRFS ISSAKFYAAE TLVALEYLHM
201: MGVVYRDLKP ENVLVREDGH IMLSDFDLSL KCDVVPKLLR PKPDQEATGK KVKSSTPSCA TPMQPVLSCF SASNKKKKGS VRTIVASQAD DVQEIDPELV
301: AEPINARSKS FVGTHEYLAP EVISGQGHGS AVDWWTLGVF LYELLYGRTP FKGENNEKTL INILKQPLTF PRIGVSSSKE FEEMVKVQDL ISKLLVKNPK
401: KRIGSLKGSV EIKRHEFFKG VNWALIRSVK PPEVPRDHLQ KIIRSRASLP KLSKKERDAP YQIPHHFDYF

Best Arabidopsis Sequence Match ( AT2G26700.1 )
(BLAST)

001: MANSSIFYKD NESDYESSTV GPDSSRRTSW LSSSFTASPS CSSISHLSNH GLNSYNQSKP HKANQVAWEA MARLRRCCGR AVGLEHFRLL KRLGSGDIGS
101: VYLCQIRGSP ETAFYAMKVV DKEAVAVKKK LGRAEMEKKI LGMLDHPFCP TLYAAFEASH YSFLVMEYCP GGDLYAVRLR QPSKRFTISS TRFYAAETLV
201: ALEYLHMMGI VYRDLKPENV LIREDGHVML SDFDLSFKCD VVPQFLSDND RDRGHQEDDD DISIRRKCST PSCTTTPLNP VISCFSPTSS RRRKKNVVTT
301: TIHENAAGTS DSVKSNDVSR TFSRSPSSCS RVSNGLRDIS GGCPSIFAEP INARSKSFVG THEYLAPEVI SGQGHGSAVD WWTYGIFLYE MIFGRTPFKG
401: DNNEKTLVNI LKAPLTFPKV IVNSPKEYED MVNAQDLIIK LLVKNPKKRL GSLKGSIEIK RHEFFEGVNW ALIRSIKPPW VPKEETSHKT KGDNRSVNYY
501: LPPRFMMSRK ERNEPYHVSN YFDYF

Arabidopsis Description

PID2Protein kinase PINOID 2 [Source:UniProtKB/Swiss-Prot;Acc:Q64FQ2]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.