Factsheet for VIT_19s0027g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
vacuole 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0074g00100.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53700.1	VIT_13s0074g00100.t01	AT5G04510.1	16973627
AT3G14370.1	VIT_13s0074g00100.t01	AT5G04510.1	16973627

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G53700.1	Thale cress	cytosol	66.46	66.18
KRH43840	Soybean	cytosol	64.35	66.02
Solyc07g056400.1.1	Tomato	nucleus	66.67	65.42
CDY30659	Canola	nucleus	67.51	65.17
PGSC0003DMT400079838	Potato	nucleus	66.03	65.07
KRH13630	Soybean	nucleus	65.61	65.06
Bra041025.1-P	Field mustard	nucleus	67.3	64.84
CDY67737	Canola	nucleus	67.3	64.84
CDX98447	Canola	nucleus	64.14	64.14
AT3G14370.1	Thale cress	nucleus	64.56	63.75
CDX97569	Canola	nucleus	64.35	63.67
Bra027344.1-P	Field mustard	nucleus	64.35	63.67
GSMUA_Achr4P21830_001	Banana	cytosol	46.41	49.55
GSMUA_Achr4P18040_001	Banana	cytosol	45.78	48.12
VIT_13s0074g00730.t01	Wine grape	cytosol	32.7	44.8
Os03t0253200-01	Rice	nucleus	44.94	41.93
TraesCS4D01G222200.1	Wheat	nucleus	45.15	41.31
TraesCS4B01G221800.1	Wheat	nucleus	44.94	41.2
VIT_19s0085g01140.t01	Wine grape	cytosol	38.19	41.04
TraesCS4A01G082200.1	Wheat	nucleus	44.73	40.85
VIT_11s0016g04910.t01	Wine grape	nucleus, plastid	40.3	40.64
EER95166	Sorghum	nucleus	44.73	40.38
VIT_10s0003g04320.t01	Wine grape	cytosol, plastid	38.4	40.35
HORVU4Hr1G062610.1	Barley	nucleus, vacuole	44.3	40.0
Zm00001d028447_P001	Maize	nucleus	44.09	39.51
VIT_06s0061g01560.t01	Wine grape	nucleus	36.92	38.89
VIT_14s0066g02140.t01	Wine grape	cytosol	40.08	35.32
VIT_19s0015g00770.t01	Wine grape	extracellular	41.98	32.57
VIT_10s0116g00440.t01	Wine grape	plastid	42.41	32.42
VIT_15s0021g01540.t01	Wine grape	cytosol	43.88	29.21
VIT_14s0066g00460.t01	Wine grape	cytosol, plastid	40.93	28.61
VIT_08s0007g03600.t01	Wine grape	cytosol	41.56	22.8
VIT_06s0061g01540.t01	Wine grape	cytosol	40.72	21.96

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100257743	wikigene:100257743	MapMan:18.4.6.5	Gene3D:3.30.200.20	EMBL:AM452704
ProteinID:CAN80973	ProteinID:CAN80973.1	ProteinID:CCB47256	ProteinID:CCB47256.1	UniProt:F6H4W7	EMBL:FN595234
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0035556	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100257743	wikigene:LOC100257743	PFAM:PF00069
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24351	PANTHER:PTHR24351:SF82	InterPro:Prot_kinase_dom	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000198638C	ArrayExpress:VIT_19s0027g00020	EnsemblPlantsGene:VIT_19s0027g00020	EnsemblPlants:VIT_19s0027g00020.t01
RefSeq:XP_002263341	RefSeq:XP_002263341.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:-:18129423..18130875

Molecular Weight (calculated)

52969.8 Da

IEP (calculated)

8.997

GRAVY (calculated)

-0.353

Length

474 amino acids

Sequence
(BLAST)

001: MDEETFFPSD TDIDFSFTST TSSVTTATDR TFASSSARTS LARSSLTLSF NESRLSTSTA GATAAANLHH RPHRKSDPHW SAINAATTLS SDGALHLRHL
101: KLLRHLGTGN LGRVFLCRLR DCDAANFALK VVDRDALTNK KLSHVQMEAD ILSALDHPFL PTLYAHLEVS HYTCLLIDYC PGGDLHSLLR KQPGNRLPVD
201: AVRFYAAEVL VALEYLHATG VVYRDLKPEN VLLREDGHIM LSDFDLCFKA DVVPILESRA RTRPVHGCFG SREAAEEVVA EFVAEPTDAF SRSCVGTHEY
301: LAPELVAGTG HGNGVDWWAF GVFIFEMLHG TTPFKGGSKE ATLRNIASTR QVKFQARDEE EKGVGITEAR DLIERLLVKD PRKRLGFSRG ATDIKRHPFF
401: NGIKWPLIRT YTPPEVRGVA RKTKAHVSHV TGVPSERGHW WWNSKKNKGS KHNFTFNNNN YYSYINYKKV KKCA

Best Arabidopsis Sequence Match ( AT1G53700.1 )
(BLAST)

001: MEDDGYYLDT DLDLSFTSTA TDRTFTSSSA RSSLARSSLT LSFNDRLSTA TTPSTTTSSA ATTLHHRRYD PHWTSIRAAT TLSSDGRLHL RHFKLVRHLG
101: TGNLGRVFLC HLRDCPNPTG FALKVIDRDV LTAKKISHVE TEAEILSLLD HPFLPTLYAR IDASHYTCLL IDYCPNGDLH SLLRKQPNNR LPISPVRFFA
201: AEVLVALEYL HALGIVYRDL KPENILIRED GHIMLSDFDL CFKADVVPTF RSRRFRRTSS SPRKTRRGGG CFSTEVEYER EEIVAEFAAE PVTAFSKSCV
301: GTHEYLAPEL VAGNGHGSGV DWWAFGIFLY EMLYGTTPFK GGTKEQTLRN IVSNDDVAFT LEEEGMVEAK DLIEKLLVKD PRKRLGCARG AQDIKRHEFF
401: EGIKWPLIRN YKPPEIRGLV KKTKAHAGHV TAAVTPRRNK WLWWALSHLL RSKSLSKSSS KIQSNNNYYH YVGKKL

Arabidopsis Description

WAG1Serine/threonine-protein kinase WAG1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8M5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.