Factsheet for VIT_13s0074g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g03600.t01
VIT_10s0003g04320.t01
VIT_10s0116g00440.t01
VIT_11s0016g04910.t01
VIT_14s0066g00460.t01
VIT_14s0066g02140.t01
VIT_19s0027g00020.t01
VIT_19s0085g01140.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04510.1	VIT_19s0085g01140.t01	AT1G16440.1	16973627
AT5G04510.1	VIT_19s0027g00020.t01	AT1G53700.1	16973627
AT5G04510.1	VIT_11s0016g04910.t01	AT2G26700.1	16973627
AT5G04510.1	VIT_10s0003g04320.t01	AT2G34650.1	16601102
AT5G04510.1	VIT_08s0007g03600.t01	AT2G36350.1	16973627
AT5G04510.1	VIT_19s0027g00020.t01	AT3G14370.1	16973627
AT5G04510.1	VIT_14s0066g00460.t01	AT3G27580.1	16973627
AT5G04510.1	VIT_14s0066g02140.t01	AT5G40030.1	16973627
AT5G04510.1	VIT_10s0116g00440.t01	AT5G47750.1	16973627
AT5G04510.1	VIT_10s0116g00440.t01	AT5G47750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34704	Soybean	cytosol	85.57	88.19
KRG92082	Soybean	cytosol	85.18	87.78
PGSC0003DMT400070360	Potato	cytosol	83.0	86.78
Solyc03g071750.2.1	Tomato	cytosol	82.61	86.54
Solyc11g007760.1.1	Tomato	cytosol	84.39	86.44
PGSC0003DMT400043552	Potato	cytosol	81.82	86.43
CDY41359	Canola	cytosol	80.83	83.98
AT3G10540.1	Thale cress	cytosol	80.43	83.74
AT5G04510.1	Thale cress	cytosol	81.23	83.71
CDY68313	Canola	cytosol	76.28	83.55
Bra034125.1-P	Field mustard	cytosol	80.63	83.44
Bra009447.1-P	Field mustard	cytosol	80.63	83.27
CDX70218	Canola	cytosol	80.63	83.27
CDY44862	Canola	cytosol	80.04	82.82
CDY08594	Canola	cytosol	77.87	81.91
Bra029850.1-P	Field mustard	cytosol	77.87	81.91
CDY00952	Canola	cytosol	78.06	81.78
GSMUA_Achr10P...	Banana	cytosol	74.7	75.6
GSMUA_Achr5P26030_001	Banana	cytosol	74.51	75.1
Os01t0872800-01	Rice	cytosol	70.75	71.89
Zm00001d042676_P001	Maize	cytosol	50.99	71.07
TraesCS3D01G376500.1	Wheat	cytosol	70.75	70.61
EES03961	Sorghum	cytosol	70.16	70.44
TraesCS3B01G415800.1	Wheat	cytosol	69.96	70.38
TraesCS3A01G383400.1	Wheat	cytosol, plastid	70.16	70.16
HORVU3Hr1G082260.4	Barley	cytosol	70.36	66.79
VIT_17s0000g07520.t01	Wine grape	cytosol, plastid	23.52	26.33
VIT_04s0008g01400.t01	Wine grape	cytosol	25.3	25.45
VIT_18s0001g10470.t01	Wine grape	cytosol	25.69	24.76
VIT_11s0016g01800.t01	Wine grape	cytosol	23.91	24.3
VIT_05s0049g01220.t01	Wine grape	cytosol	26.28	24.18
VIT_10s0003g05720.t01	Wine grape	cytosol	26.28	23.58
VIT_07s0005g03690.t01	Wine grape	cytosol	25.49	23.54
VIT_08s0058g01440.t01	Wine grape	cytosol	22.53	23.31
VIT_18s0001g12260.t01	Wine grape	cytosol	26.09	11.9
VIT_16s0022g01240.t01	Wine grape	cytosol	26.68	11.39
VIT_17s0000g02000.t01	Wine grape	cytosol, plastid	25.89	10.03

Protein Annotations

KEGG:04150+2.7.11.1	KEGG:04151+2.7.11.1	KEGG:04714+2.7.11.1	KEGG:04926+2.7.11.1	KEGG:05165+2.7.11.1	Gene3D:1.10.510.10
EntrezGene:100264394	wikigene:100264394	MapMan:18.4.6.2	Gene3D:2.30.29.30	Gene3D:3.30.200.20	ProteinID:CCB62308
ProteinID:CCB62308.1	UniProt:F6I5U0	EMBL:FN596753	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0018105	GO:GO:0019538
GO:GO:0035556	InterPro:IPR000719	InterPro:IPR011993	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100264394	wikigene:LOC100264394
InterPro:PDK1-typ_PH	PFAM:PF00069	PFAM:PF14593	InterPro:PH-like_dom_sf	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24356	PANTHER:PTHR24356:SF163	InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF50729	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI000210A286	ArrayExpress:VIT_13s0074g00100	EnsemblPlantsGene:VIT_13s0074g00100	EnsemblPlants:VIT_13s0074g00100.t01	unigene:Vvi.8541
RefSeq:XP_002262670	RefSeq:XP_002262670.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:+:7477715..7487281

Molecular Weight (calculated)

55982.6 Da

IEP (calculated)

7.978

GRAVY (calculated)

-0.380

Length

506 amino acids

Sequence
(BLAST)

001: MLAVAGGEGA QMEKDFDSKL RIQSNSSNGG TAGGGGGGAG AVQRSKSFAF RAPQENFTIQ DFELGKIYGV GSYSKVVRAR KKDTGIVYAL KIMDKKFITK
101: ENKTAYVKLE RIVLDQLDHP GIVRLFFTFQ DTFSLYMALE SCEGGELFDQ ITRKGRLSEN EARFYAAEVV DALEYIHSLG LIHRDIKPEN LLLTADGHIK
201: IADFGSVKPM QDSLITVLPN AASDDKACTF VGTAAYVPPE VLNSSPATFG NDLWALGCTL YQMLSGTSPF KDASEWLIFQ RIIARDIRFP NYFSDEARDL
301: IDRLLDTEPS RRPGAGRDGY ASLKMHPFFN GVDWKNLRSQ TPPKLAMEAM AHSSEGDDGQ DSWNPAHIGD GSARQNDGNS GATSSSEAPG SVTRLASIDS
401: FDSKWQQFLE QGESVLMISM VKKIQKLTNK KVQLILTNKP KLIYVDPAKL MVKGNIIWSD NPNDLSIQVT SPSHFKICTP KKVMSFEDSK QRAWQWKKAI
501: EGLQNR

Best Arabidopsis Sequence Match ( AT5G04510.1 )
(BLAST)

001: MLAMEKEFDS KLVLQGNSSN GANVSRSKSF SFKAPQENFT SHDFEFGKIY GVGSYSKVVR AKKKETGTVY ALKIMDKKFI TKENKTAYVK LERIVLDQLE
101: HPGIIKLYFT FQDTSSLYMA LESCEGGELF DQITRKGRLS EDEARFYTAE VVDALEYIHS MGLIHRDIKP ENLLLTSDGH IKIADFGSVK PMQDSQITVL
201: PNAASDDKAC TFVGTAAYVP PEVLNSSPAT FGNDLWALGC TLYQMLSGTS PFKDASEWLI FQRIIARDIK FPNHFSEAAR DLIDRLLDTE PSRRPGAGSE
301: GYVALKRHPF FNGVDWKNLR SQTPPKLAPD PASQTASPER DDTHGSPWNL THIGDSLATQ NEGHSAPPTS SESSGSITRL ASIDSFDSRW QQFLEPGESV
401: LMISAVKKLQ KITSKKVQLI LTNKPKLIYV DPSKLVVKGN IIWSDNSNDL NVVVTSPSHF KICTPKKVLS FEDAKQRASV WKKAIETLQN R

Arabidopsis Description

PDPK13-phosphoinositide-dependent protein kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XF67]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.