Factsheet for PGSC0003DMT400050818

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043552
PGSC0003DMT400070360

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26610.1	PGSC0003DMT400043552	AT5G04510.1	16973627
AT4G26610.1	PGSC0003DMT400070360	AT5G04510.1	16973627
AT4G26610.1	PGSC0003DMT400043552	AT5G04510.1	21798944
AT4G26610.1	PGSC0003DMT400070360	AT5G04510.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g015130.2.1	Tomato	cytosol, plastid	98.68	98.68
Bra035592.1-P	Field mustard	cytosol	47.28	79.28
CDY06552	Canola	cytosol, plastid	60.46	75.83
CDY20744	Canola	cytosol, plastid	59.97	75.52
CDY11972	Canola	cytosol, plastid	60.63	74.8
CDY36769	Canola	cytosol, plastid	60.46	74.59
Bra028955.1-P	Field mustard	cytosol, plastid	60.46	74.59
AT4G26610.1	Thale cress	cytosol	61.94	74.31
AT5G55910.2	Thale cress	cytosol, plastid	60.79	74.1
CDY17366	Canola	cytosol, plastid	60.96	74.0
Bra002868.1-P	Field mustard	cytosol, plastid	60.79	73.8
CDY28629	Canola	cytosol, plastid	60.63	73.6
PGSC0003DMT400057021	Potato	plastid	72.65	73.01
Bra026417.1-P	Field mustard	cytosol	61.12	72.32
CDX89320	Canola	cytosol	61.12	72.32
PGSC0003DMT400022397	Potato	plastid	72.98	72.27
CDX94306	Canola	cytosol	60.79	71.93
PGSC0003DMT400025008	Potato	cytosol	48.76	65.78
PGSC0003DMT400003557	Potato	cytosol, plastid	51.07	59.62
PGSC0003DMT400032816	Potato	cytosol	60.13	57.84
PGSC0003DMT400017808	Potato	cytosol, plastid	58.81	53.6
PGSC0003DMT400067034	Potato	cytosol	58.15	50.43
PGSC0003DMT400053292	Potato	cytosol, plastid	38.39	50.22
PGSC0003DMT400050201	Potato	cytosol	37.07	48.81
PGSC0003DMT400068252	Potato	nucleus	37.23	47.78
PGSC0003DMT400068494	Potato	cytosol	53.54	46.23
PGSC0003DMT400079838	Potato	nucleus	33.11	41.79
PGSC0003DMT400068291	Potato	cytosol	48.6	35.2
PGSC0003DMT400018337	Potato	cytosol	47.94	34.11
PGSC0003DMT400006862	Potato	cytosol	48.93	29.12
PGSC0003DMT400072395	Potato	nucleus	48.11	29.05

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102596558	MapMan:18.4.6.5	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	UniProt:M1BQX8	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400019737	PGSC:PGSC0003DMG400019737
EnsemblPlants:PGSC0003DMT400050818	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24351	PANTHER:PTHR24351:SF112	InterPro:Prot_kinase_dom
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002962FD6	RefSeq:XP_006350249.1	SEG:seg

Description

Serine/threonine protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400019737]

Coordinates

chr4:-:9274796..9280465

Molecular Weight (calculated)

66689.1 Da

IEP (calculated)

8.777

GRAVY (calculated)

-0.429

Length

607 amino acids

Sequence
(BLAST)

001: MASNFGARAP LEPKQKPVGA RQTAETNDSS SFLTQVSKMN ELSLALSGKL PESGKITTHD VDGVRNDKKY QRGSNDLSID KSKNAPTDIQ NVSTPGNHEV
101: NGTRSSLESS TDQGKKTSNQ TSSKNSSVSA KVSDGTSNLA KNSGSGKISD HADLVESGKS SMCRGSTSTD VSDESTFSSF SSSVNKPHKT NDVRWEAIQA
201: VRSKDGSLGL SHFRLLKRLG CGDIGSVYLA ELSGTKCYFA MKVMDKASLA SRKKLLRAQT EREILSSLDH PFLPSLYSHF ETDKFSCLVM EFCPGGDLHT
301: LRQRQPGKHF SEQAVKFYVA EVLLALEYLH MLGIIYRDLK PENVLVREDG HIMLSDFDLS LCCSFSPTLV KTSSLELEPL RKNSGYCVQP ACIEPSCIQP
401: SCVVPTTCFS RRIFSSKSKK DRKPKNDVGN QVRPLPELMA EPTSARSMSF VGTHEYLAPE IIKGEGHGSA VDWWTFGIFL YELLFGKTPF KGSGNRATLF
501: NVVGQPLRFP ESPVVSFAAR DLIRGLLIKE PQNRLAYKRG ATEIKQHPFF EGVNWALIRC ASPPEVPKPV EFERLPVPAP STNQKTVPAA VAPSQKGSDN
601: YLEFDFF

Best Arabidopsis Sequence Match ( AT5G47750.1 )
(BLAST)

001: MASTRKPSGH GAEVEAQKRS SSNSSTKSAK AETFEPMQLQ RSVTNPRAVG IPESKRLPES FRKRSSDPAV CKPDFSSLST VLEHVDSLTI DEKKTSGFGS
101: VKTSSASAKL SDGTSSLGKT SGSAKLSGRL DFMESGKSSI CRGSTSSDVS DESSCSSFSS TVNKPHKAND LRWEAIQAVR VRDGLLGLSH FRLLKRLGCG
201: DIGSVYLSEL SGTKCYFAMK VMDKTSLASR KKLLRAQTER EILQSLDHPF LPTLYTHFET EKFSCLVMEF CPGGDLHTLR QRQPGKHFSE QAVKFYIAES
301: LLALEYLHML GIVYRDLKPE NVLVREDGHI MLSDFDLSLR CLVSPTLVKS AAIESDPLRK NVYCVQPACI EPSCIQPSCT VPTTCFSPRL FSSKSKKDRK
401: PKNDTANQVR PLPELVAEPT DARSMSFVGT HEYLAPEIIK GEGHGSAVDW WTFGIFLYEL LFGRTPFKGS GNRQTLFNVV GQPLRFPETP VVSFAARDLI
501: RGLLMKEPQQ RLGFKRGATE VKQHPFFEGV NWALIRCATP PEIPKPVELE KGAVSVAEAP SSQKTAAGLV LNAQKGSDNY LEFDFF

Arabidopsis Description

D6PKL2Serine/threonine-protein kinase D6PKL2 [Source:UniProtKB/Swiss-Prot;Acc:Q39183]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.