Factsheet for PGSC0003DMT400003557

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
vacuole 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043552
PGSC0003DMT400070360

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40030.1	PGSC0003DMT400043552	AT5G04510.1	16973627
AT5G40030.1	PGSC0003DMT400070360	AT5G04510.1	16973627

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087510.2.1	Tomato	cytosol	97.69	97.69
CDX74407	Canola	cytosol, plastid	66.35	72.18
AT5G40030.1	Thale cress	cytosol, plastid	68.46	71.34
Bra025621.1-P	Field mustard	cytosol, plastid	67.5	71.2
VIT_14s0066g02140.t01	Wine grape	cytosol	73.65	71.19
CDY30287	Canola	cytosol, plastid	68.08	70.52
PGSC0003DMT400025008	Potato	cytosol	53.85	62.22
PGSC0003DMT400022397	Potato	plastid	60.58	51.39
PGSC0003DMT400050818	Potato	cytosol	59.62	51.07
PGSC0003DMT400057021	Potato	plastid	59.23	50.99
PGSC0003DMT400032816	Potato	cytosol	58.08	47.86
PGSC0003DMT400053292	Potato	cytosol, plastid	42.31	47.41
PGSC0003DMT400050201	Potato	cytosol	41.92	47.29
PGSC0003DMT400068252	Potato	nucleus	42.88	47.15
PGSC0003DMT400067034	Potato	cytosol	58.27	43.29
PGSC0003DMT400017808	Potato	cytosol, plastid	55.0	42.94
PGSC0003DMT400068494	Potato	cytosol	54.04	39.97
PGSC0003DMT400079838	Potato	nucleus	35.38	38.25
PGSC0003DMT400068291	Potato	cytosol	52.31	32.46
PGSC0003DMT400018337	Potato	cytosol	50.38	30.72
PGSC0003DMT400072395	Potato	nucleus	50.77	26.27
PGSC0003DMT400006862	Potato	cytosol	50.77	25.88

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.6.5	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	UniProt:M0ZLW9	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400001405	PGSC:PGSC0003DMG400001405	EnsemblPlants:PGSC0003DMT400003557
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24351	PANTHER:PTHR24351:SF84	InterPro:Prot_kinase_dom	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002957923	:	:	:

Description

Serine/threonine protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400001405]

Coordinates

chr2:+:46550846..46553317

Molecular Weight (calculated)

57812.0 Da

IEP (calculated)

6.855

GRAVY (calculated)

-0.273

Length

520 amino acids

Sequence
(BLAST)

001: MNREANNSID TDATSLKVSF QELSVSNTNS TSIELCSTSF TLSENSVGSK LSDGGFEGKG MDSLNVGVDK NVEFVESENT SFSSVSYCNS ADPNEVSYRR
101: ICPSKPHKGN DIRWDAIQCV KGKDGELGLA HFRLLKKLGF GDIGSVYLAE LRGMGCLFAM KVMDKGMLAG RKKVMRAQTE REILGLLDHP FLPTLYSHFE
201: TDKFSCLLME FCSGGDLHLL RQRQPGKHFT EQAARFYASE VLLALEYLHM MGVVYRDLKP ENVLVREDGH IMLSDFDLSL RCCVNPTLVR SSDEPSCAIS
301: AYCIQPSCID PACKLPVCVE PSCFQPSCFK PRLFNNKTTK TRGDRAMVSS DSLPVLVAEP TTARSMSFVG THEYLAPEII RGDGHGSAVD WWTFGIFLYE
401: LLHGKTPFKG NGNRETLFNV VGQPLKFPEG STVSFAAKDL IRGLLVKDPQ KRLGFKRGAT EIKQHPFFEN VNWALIRSTH PPEIPKPVDL TFFKQSSHAN
501: EKAASDSDRS SGPYLDFEFF

Best Arabidopsis Sequence Match ( AT5G40030.1 )
(BLAST)

001: MSKQTPNLES LQDCSSSNYN NANASPVSGS ASFKTSSNGS EDVRLNNSIS LSFCSSNSVS SEANLEKTQS FDANEANFKR VFAPSKPHKG NDLRWDAIQN
101: VKCSKNEDLG LGHFRLLKKL GCGDIGSVYL AELREMGCFF AMKVMDKGML IGRKKLVRAQ TEREILGLLD HPFLPTLYSH FETEKFSCLL MEFCSGGDLH
201: ILRQKQPGKH FSELAARFYA SEVLLALEYL HMMGVVYRDL KPENVMVRED GHIMLSDFDL SLQSFVSPTL IQSTSQPSCH IASYCIQPPC IDPSCKLPVA
301: CIQPSCFKPR FLNNKPRKAK TEKAGSDSLP MLIAEPTAAR SMSFVGTHEY LAPEIIRGDG HGSSVDWWTF GIFLYELLTG KTPFKGNGNR ETLFNVVGQP
401: LKFPEGSISF AAKDLIRGLL TKDPKKRLGF KKGATEIKQH PFFNNVNWAL IRSTTPPEIP KPIDLSILNE TLKSSVQQQG KHSKQSDSSS GPYLDFEFF

Arabidopsis Description

Protein kinase [Source:UniProtKB/TrEMBL;Acc:Q9LUK3]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.