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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • nucleus 2
  • plastid 3
  • cytosol 2
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70218
CDY44862

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74407 Canola cytosol, plastid 94.42 99.16
Bra025621.1-P Field mustard cytosol, plastid 97.21 98.99
AT5G40030.1 Thale cress cytosol, plastid 92.03 92.59
PGSC0003DMT400003557 Potato cytosol, plastid 70.52 68.08
Solyc02g087510.2.1 Tomato cytosol 70.12 67.69
VIT_14s0066g02140.t01 Wine grape cytosol 69.72 65.06
CDY20744 Canola cytosol, plastid 54.98 57.26
CDY06552 Canola cytosol, plastid 54.98 57.02
CDY11972 Canola cytosol, plastid 54.78 55.89
CDY36769 Canola cytosol, plastid 54.58 55.69
CDY28629 Canola cytosol, plastid 55.38 55.6
CDY17366 Canola cytosol, plastid 55.18 55.4
CDX89320 Canola cytosol 54.58 53.41
CDX94306 Canola cytosol 54.38 53.22
CDY17708 Canola cytosol 57.37 51.99
CDY33329 Canola cytosol 50.0 51.54
CDX77795 Canola cytosol 57.57 50.61
CDY35093 Canola cytosol 49.8 49.02
CDX74691 Canola cytosol 53.78 48.47
CDX83710 Canola cytosol, plastid 52.59 48.09
CDY56474 Canola cytosol 53.98 47.38
CDY42166 Canola cytosol, plastid 52.39 46.22
CDY08414 Canola cytosol, plastid 52.39 46.06
CDY50542 Canola cytosol 51.79 45.45
CDY08710 Canola cytosol, plastid 39.84 45.35
CDY13725 Canola plastid 51.2 44.62
CDX84294 Canola cytosol, plastid 37.05 42.37
CDY30488 Canola cytosol 51.99 42.23
CDY43662 Canola cytosol 36.85 42.14
CDY17273 Canola cytosol 36.85 42.14
CDY23458 Canola cytosol 52.39 40.71
CDY48186 Canola cytosol 39.24 40.37
CDX97569 Canola nucleus 35.66 37.37
CDX98447 Canola nucleus 35.06 37.13
CDY30659 Canola nucleus 35.26 36.05
CDY67737 Canola nucleus 35.06 35.77
CDY13336 Canola cytosol, plastid 49.4 35.63
CDX75049 Canola cytosol 46.61 32.37
CDX67542 Canola cytosol 50.2 31.38
CDX84133 Canola cytosol 45.82 29.91
CDX76251 Canola cytosol 45.82 27.95
CDX70297 Canola cytosol 48.8 27.94
CDY10368 Canola cytosol 48.8 27.1
CDX73596 Canola cytosol 49.0 24.48
CDX78131 Canola cytosol 49.0 24.36
CDX77055 Canola cytosol 39.64 23.17
CDY33330 Canola cytosol, mitochondrion, nucleus 6.97 21.47
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.6.5Gene3D:3.30.200.20GO:A0A078GYF7UniProt:A0A078GYF7EnsemblPlants:CDY30287
ProteinID:CDY30287ProteinID:CDY30287.1ncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0006464GO:GO:0006468GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016301GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00044944001
InterPro:IPR000719InterPro:Kinase-like_dom_sfPFAM:PF00069ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR24351
PANTHER:PTHR24351:SF84InterPro:Prot_kinase_domSMART:SM00220SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASUniParc:UPI0004EEDBD0
SEG:seg:::::
Description
BnaC04g31980DBnaC04g31980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYF7]
Coordinates
chrLK032251:-:426690..428639
Molecular Weight (calculated)
55859.5 Da
IEP (calculated)
7.693
GRAVY (calculated)
-0.405
Length
502 amino acids
Sequence
(BLAST)
001: MSRQTPNLES SHDSSSNADS SQVSGSESFK PSSSNGSQDV KLNNSVSLSF CSSNSVSSEA NLEKSQSFDT NEAAFKRVFS PSKPHKGNDL RWDAIQSVKC
101: SKNEDLGLGH FRLLKKLGCG DIGSVYLAEL REMGCFFAMK VMDKGMLVGR KKLVRAQTER EILGLLDHPF LPTLYSHFET EKFSCLLMEF CSGGDLHILR
201: QKQPGKHFSE QAARFYASEV LLALEYLHMM GVVYRDLKPE NVMVREDGHI MLSDFDLSLQ SFASPTLIQS TSQPSCDIAS YCVQPSCIVD PSCRLPIACI
301: QPSCFKPRFL NGKPRKANKT EKGGSDSLPM LIAEPTDARS MSFVGTHEYL APEIIRGDGH GSSVDWWTFG IFLYELLTGK TPFKGNGNRE TLFNVVGQPL
401: KFPEGSISFA AKDLIRGLLA KDPKKRLGFK KGATEIKQHP FFNNVNWALI RSTNPPEIPK PIDLSILNET LKSSVQQQQQ QQEKHSQQSD SSSGPYLEFE
501: FF
Best Arabidopsis Sequence Match ( AT5G40030.1 )
(BLAST)
001: MSKQTPNLES LQDCSSSNYN NANASPVSGS ASFKTSSNGS EDVRLNNSIS LSFCSSNSVS SEANLEKTQS FDANEANFKR VFAPSKPHKG NDLRWDAIQN
101: VKCSKNEDLG LGHFRLLKKL GCGDIGSVYL AELREMGCFF AMKVMDKGML IGRKKLVRAQ TEREILGLLD HPFLPTLYSH FETEKFSCLL MEFCSGGDLH
201: ILRQKQPGKH FSELAARFYA SEVLLALEYL HMMGVVYRDL KPENVMVRED GHIMLSDFDL SLQSFVSPTL IQSTSQPSCH IASYCIQPPC IDPSCKLPVA
301: CIQPSCFKPR FLNNKPRKAK TEKAGSDSLP MLIAEPTAAR SMSFVGTHEY LAPEIIRGDG HGSSVDWWTF GIFLYELLTG KTPFKGNGNR ETLFNVVGQP
401: LKFPEGSISF AAKDLIRGLL TKDPKKRLGF KKGATEIKQH PFFNNVNWAL IRSTTPPEIP KPIDLSILNE TLKSSVQQQG KHSKQSDSSS GPYLDFEFF
Arabidopsis Description
Protein kinase [Source:UniProtKB/TrEMBL;Acc:Q9LUK3]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.