Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026057.1-P | Field mustard | cytosol, nucleus, plastid | 88.96 | 98.64 |
| CDY33329 | Canola | cytosol | 32.52 | 10.88 |
| CDY35093 | Canola | cytosol | 32.52 | 10.39 |
| CDY06552 | Canola | cytosol, plastid | 23.93 | 8.06 |
| CDY20744 | Canola | cytosol, plastid | 23.31 | 7.88 |
| CDY17366 | Canola | cytosol, plastid | 23.31 | 7.6 |
| CDY11972 | Canola | cytosol, plastid | 22.7 | 7.52 |
| CDY36769 | Canola | cytosol, plastid | 22.7 | 7.52 |
| CDY08710 | Canola | cytosol, plastid | 20.25 | 7.48 |
| CDY28629 | Canola | cytosol, plastid | 22.7 | 7.4 |
| CDY42166 | Canola | cytosol, plastid | 25.77 | 7.38 |
| CDY08414 | Canola | cytosol, plastid | 25.77 | 7.36 |
| CDX74407 | Canola | cytosol, plastid | 21.47 | 7.32 |
| CDX83710 | Canola | cytosol, plastid | 24.54 | 7.29 |
| CDX89320 | Canola | cytosol | 22.7 | 7.21 |
| CDX94306 | Canola | cytosol | 22.7 | 7.21 |
| CDY13725 | Canola | plastid | 25.15 | 7.12 |
| CDY30287 | Canola | cytosol, plastid | 21.47 | 6.97 |
| CDX84294 | Canola | cytosol, plastid | 18.4 | 6.83 |
| CDY43662 | Canola | cytosol | 18.4 | 6.83 |
| CDY17273 | Canola | cytosol | 18.4 | 6.83 |
| CDY50542 | Canola | cytosol | 23.93 | 6.82 |
| CDY17708 | Canola | cytosol | 22.7 | 6.68 |
| CDX77795 | Canola | cytosol | 23.31 | 6.65 |
| CDX74691 | Canola | cytosol | 22.7 | 6.64 |
| CDY56474 | Canola | cytosol | 22.7 | 6.47 |
| CDX98447 | Canola | nucleus | 18.4 | 6.33 |
| CDY30488 | Canola | cytosol | 23.31 | 6.15 |
| CDX97569 | Canola | nucleus | 17.79 | 6.05 |
| CDY48186 | Canola | cytosol | 17.79 | 5.94 |
| CDY23458 | Canola | cytosol | 23.31 | 5.88 |
| CDY30659 | Canola | nucleus | 16.56 | 5.5 |
| CDY67737 | Canola | nucleus | 16.56 | 5.49 |
| CDY13336 | Canola | cytosol, plastid | 20.25 | 4.74 |
| CDX67542 | Canola | cytosol | 21.47 | 4.36 |
| CDX75049 | Canola | cytosol | 17.79 | 4.01 |
| CDX70297 | Canola | cytosol | 20.86 | 3.88 |
| CDX76251 | Canola | cytosol | 19.02 | 3.77 |
| CDY10368 | Canola | cytosol | 20.86 | 3.76 |
| CDX84133 | Canola | cytosol | 17.18 | 3.64 |
| CDX73596 | Canola | cytosol | 20.86 | 3.38 |
| CDX77055 | Canola | cytosol | 17.79 | 3.38 |
| CDX78131 | Canola | cytosol | 20.86 | 3.37 |
Protein Annotations
| Gene3D:1.20.58.1600 | MapMan:15.3.3.1.8 | GO:A0A078H3V2 | UniProt:A0A078H3V2 | EnsemblPlants:CDY33330 | ProteinID:CDY33330 |
| ProteinID:CDY33330.1 | ncoils:Coil | GO:GO:0001104 | GO:GO:0003674 | GO:GO:0003712 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016592 | EnsemblPlantsGene:GSBRNA2T00054163001 |
| InterPro:IPR038427 | InterPro:MED22_sf | InterPro:Med22 | PFAM:PF06179 | PANTHER:PTHR12434 | UniParc:UPI0004EF4A43 |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g12530DBnaC05g12530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3V2]
Coordinates
chrLK032312:-:27902..29092
Molecular Weight (calculated)
17453.7 Da
IEP (calculated)
5.799
GRAVY (calculated)
-0.331
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMKNKAGGA GGGMSGSGEG AGPTAAAAAA ALQKQKALLQ RVETDITSVV DNFTQIVNVA RVSDLPVKNS QEAYMMEMRA SKMVQAADSI LKLVSELKQT
101: AIFSGFASLN DHVEQRIAEF DQEAEKTNRL LARIGDDASA SLKELEAHYY SSAQRLTPDQ QKS
101: AIFSGFASLN DHVEQRIAEF DQEAEKTNRL LARIGDDASA SLKELEAHYY SSAQRLTPDQ QKS
001: MNKGGGSGGG SGGGSGPTAA AAAAALQKQK ALLQRVETDI TSVVDNFTQI VNVSRVSDPP VKNSQETYMM EMRASRMVQA ADSLLKLVSE LKQTAIFSGF
101: ASLNDHVEQR IEEFDQEAEK TNRLLARIAD DASANLKELE SHYYSSAQRL TLDI
101: ASLNDHVEQR IEEFDQEAEK TNRLLARIAD DASANLKELE SHYYSSAQRL TLDI
Arabidopsis Description
MED22BSurfeit locus protein 5 subunit 22 of Mediator complex [Source:TAIR;Acc:AT1G07950]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.