Factsheet for PGSC0003DMT400032816

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400043552
PGSC0003DMT400070360

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27580.1	PGSC0003DMT400001613	AT3G47620.1	21798944
AT3G27580.1	PGSC0003DMT400043552	AT5G04510.1	16973627
AT3G27580.1	PGSC0003DMT400070360	AT5G04510.1	16973627

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093360.2.1	Tomato	cytosol	96.51	97.44
PGSC0003DMT400017808	Potato	cytosol, plastid	78.61	74.47
GSMUA_Achr5P00910_001	Banana	extracellular	31.54	70.32
VIT_14s0066g00460.t01	Wine grape	cytosol, plastid	74.33	69.17
KRG93211	Soybean	cytosol	67.04	69.12
CDX83710	Canola	cytosol, plastid	59.43	68.31
KRH07149	Soybean	cytosol	68.3	68.3
KRG94078	Soybean	cytosol, plastid	68.15	68.15
AT3G27580.1	Thale cress	cytosol, plastid	59.59	65.05
Bra025288.1-P	Field mustard	cytosol	59.43	63.78
PGSC0003DMT400025008	Potato	cytosol	45.32	63.56
CDY13725	Canola	plastid	57.69	63.19
PGSC0003DMT400057021	Potato	plastid	58.48	61.09
PGSC0003DMT400050818	Potato	cytosol	57.84	60.13
PGSC0003DMT400022397	Potato	plastid	57.69	59.38
PGSC0003DMT400003557	Potato	cytosol, plastid	47.86	58.08
PGSC0003DMT400053292	Potato	cytosol, plastid	36.61	49.78
PGSC0003DMT400068252	Potato	nucleus	36.13	48.2
PGSC0003DMT400050201	Potato	cytosol	34.71	47.51
PGSC0003DMT400067034	Potato	cytosol	52.3	47.14
PGSC0003DMT400068494	Potato	cytosol	49.76	44.67
PGSC0003DMT400079838	Potato	nucleus	31.06	40.75
PGSC0003DMT400068291	Potato	cytosol	45.96	34.61
PGSC0003DMT400018337	Potato	cytosol	45.17	33.41
PGSC0003DMT400006862	Potato	cytosol	45.17	27.94
PGSC0003DMT400072395	Potato	nucleus	44.06	27.66

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102580221	MapMan:18.4.6.5	Gene3D:3.30.200.20	ProteinID:CAA62476	ProteinID:CAA62476.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069
EnsemblPlantsGene:PGSC0003DMG400012603	PGSC:PGSC0003DMG400012603	EnsemblPlants:PGSC0003DMT400032816	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24351
PANTHER:PTHR24351:SF86	InterPro:Prot_kinase_dom	UniProt:Q41493	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI00000A35B2	EMBL:X90990	RefSeq:XP_015162966.1	SEG:seg	:	:

Description

Stpk1 protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400012603]

Coordinates

chr2:+:47438176..47441935

Molecular Weight (calculated)

69616.2 Da

IEP (calculated)

6.847

GRAVY (calculated)

-0.360

Length

631 amino acids

Sequence
(BLAST)

001: MESLVDGISS LPNVHNSFAA VECNTSLASK ISHPPLMKQS ENKESSISYP IAMDLGSNTA HTQTGSVTGS KHFEANEDTV NQLAEGCSGE QVLALETESS
101: IKDLHYVSKN STSNDDLNAA AAKGLPSESG ITYCPSPQNS FYSATQYTEA KQSFSNTEVS ECASSTVDKS GESGDVSNSC DLVESRKTSF YRGSTGSDVS
201: DESSSSSFNS TTVYKPHKAN DTRWDAIQVI RAREGTLGFN HFRLLKRLGC GDIGSVFLAE LIGTRCFFAM KVMDKAALES RKKLVRAQTE REILQSLDHP
301: FLPTLYSHFE TDKFSCLVME FCPGGDLHAL RQKQPGKFFP EHAARFYVAE VLLALEYLHM LGIIYRDLKP ENVLVREDGH IMLSDFDLSL RCAVSPTLVR
401: SSNSSLESKS SSYCVQPACI EPSCVIQPAC IQPSCFTPRF LSKTKKEKKS KQKTETYNQV NRPLPELLAE PTSARSMSFV GTHEYLAPEI IKGEGHGSAV
501: DWWTFGIFLY ELLFGQTPFK GAGNRATLFN VVGQPLKFPE TPSVSFAARD LIRGLLVKEP QHRLAYRRGA TEIKQHPFFQ NVNWALIRCT SPPDVPKPSS
601: MTYNMPRTPP AGKTPGVDVK PSGNYFEIDF F

Best Arabidopsis Sequence Match ( AT3G27580.1 )
(BLAST)

001: MDSSSSVVYV GSSSKSRNFQ SKSKGSITSF SIDSRGTKKS MKTLLIPEPE PTSPEVIESS VSSVSAESET PISIIRKKKQ SEPRFYSSPT NTFYTEAKQS
101: FTNTEFSECA SISTIGIGGI DLEKNGVMIY RGSIGSDVSD ESSSSGLSNA AYKPHRDNND KRWVAIQEVR SRVGSSLEAK DFKLIKKLGG GDIGNVYLAE
201: LIGTGVSFAV KVMEKAAIAA RKKLVRAQTE KEILQSLDHP FLPTLYSHFE TEMNSCLVME FCPGGDLHSL RQKQRGKYFP EQAARFYVAE VLLAMEYLHM
301: LGIIYRDLKP ENVLVREDGH IMLSDFDLSL RCAVSPTLVR FAAITLESKS SSYCIQPTCV DQSSCIVQPD CIQPVCFTPR FLSKGKHRKK SNDMSRQIRP
401: LPELIAEPTS ARSMSFVGTH EYLAPEIIKG EGHGSAVDWW TFGIFLYELL FGITPFRGGD NRATLFNVVG QPLRFPEHPN VSFAARDLIR GLLVKEPQHR
501: LAYRRGATEI KQHPFFQSVN WALIRCTSPP QIPQPVKPMD QAHSVRHGFS QGHGHVGYDK PPTVDVKPSG NYLEIDFF

Arabidopsis Description

D6PKL3Serine/threonine-protein kinase D6PKL3 [Source:UniProtKB/Swiss-Prot;Acc:Q05999]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.