CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91457
KRH09109
KRH35356
KRH38560

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25530.1	KRG91457	AT4G25530.1	17189287
AT4G25530.1	KRH09109	AT4G25530.1	17189287
AT4G25530.1	KRH35356	AT4G25530.1	17189287
AT4G25530.1	KRH38560	AT4G25530.1	17189287

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09109	Soybean	plastid	90.98	91.1
KRH35356	Soybean	nucleus	68.3	69.28
KRG91457	Soybean	nucleus	68.81	68.73
KRH40539	Soybean	nucleus	58.89	55.73
KRH00641	Soybean	nucleus	58.76	55.47
KRH48236	Soybean	nucleus	56.96	53.32
KRH13175	Soybean	cytosol	11.98	52.54
KRH65144	Soybean	nucleus	56.57	52.51
AT5G52170.2	Thale cress	nucleus	46.26	52.26
CDY31916	Canola	nucleus	44.59	51.41
VIT_16s0100g00670.t01	Wine grape	nucleus	51.8	51.34
CDY00515	Canola	nucleus	44.46	51.26
Bra028295.1-P	Field mustard	nucleus	44.85	51.03
KRH56105	Soybean	nucleus	46.78	49.79
KRH77881	Soybean	nucleus	44.97	47.74
KRH27601	Soybean	nucleus	44.85	47.54
KRH25398	Soybean	plastid	46.39	47.31
KRH22554	Soybean	nucleus	47.55	47.25
KRH26803	Soybean	nucleus	47.42	47.12
PGSC0003DMT400037055	Potato	nucleus	48.97	46.8
Solyc03g026070.2.1	Tomato	nucleus	48.45	46.59
KRH38939	Soybean	nucleus	40.72	43.77
KRH09477	Soybean	nucleus	40.21	43.45
KRG91238	Soybean	nucleus	39.95	42.41
KRH60596	Soybean	nucleus	38.79	42.22
PGSC0003DMT400092271	Potato	nucleus	14.3	41.89
KRH41898	Soybean	nucleus	38.53	41.47
PGSC0003DMT400076898	Potato	cytosol	26.42	41.41
PGSC0003DMT400042908	Potato	nucleus	26.55	41.37
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	15.85	40.46
PGSC0003DMT400080861	Potato	nucleus	23.84	40.3
KRH35579	Soybean	nucleus	40.08	39.97
KRH47277	Soybean	nucleus	38.66	39.95
PGSC0003DMT400028197	Potato	cytosol	17.14	39.94
CDX89415	Canola	cytosol, mitochondrion	9.15	39.89
Solyc06g035940.2.1	Tomato	nucleus	34.54	39.65
PGSC0003DMT400028195	Potato	nucleus	19.46	39.63
KRH44348	Soybean	nucleus	38.14	39.57
PGSC0003DMT400062468	Potato	cytosol	18.17	39.5
PGSC0003DMT400086035	Potato	nucleus	33.38	39.42
KRH23432	Soybean	plastid	38.66	39.37
Solyc06g050160.2.1	Tomato	nucleus	33.12	39.36
KRH09884	Soybean	plastid	37.76	39.01
PGSC0003DMT400076902	Potato	nucleus	33.63	38.96
KRH74360	Soybean	nucleus	38.79	38.15
AT4G25530.1	Thale cress	nucleus	33.38	37.76
KRH39579	Soybean	nucleus	38.53	37.38
KRH36827	Soybean	nucleus	33.38	36.53
KRH11810	Soybean	nucleus	33.38	36.33
CDY39874	Canola	plasma membrane	8.76	35.42
KRH36826	Soybean	nucleus	31.57	34.36
Bra013898.1-P	Field mustard	nucleus	26.16	32.58
CDX89416	Canola	nucleus	26.93	32.2
CDX94443	Canola	cytosol	25.52	31.53
KRH22254	Soybean	cytosol	21.01	30.47
KRH42428	Soybean	nucleus	29.12	29.85
KRH27078	Soybean	extracellular, golgi, peroxisome	12.37	29.09
KRH42429	Soybean	cytosol	23.97	25.48

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100820113	MapMan:15.5.3.3	EMBL:ACUP02005850	ncoils:Coil	EnsemblPlantsGene:GLYMA_09G143700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:K7LDX2	EnsemblPlants:KRH38560	ProteinID:KRH38560
ProteinID:KRH38560.1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF520	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	UniParc:UPI000296D075	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:35724684..35729823

Molecular Weight (calculated)

85103.7 Da

IEP (calculated)

5.552

GRAVY (calculated)

-0.328

Length

776 amino acids

Sequence
(BLAST)

001: MASVYTVDPH LFSSPFDISK QNPSTLNLAA QRRMEGHSEM GQIGESFDTS NLLGRLRDDE YESRSGSDNF DGGSGDDQDA GDDQPHKKKK KYHRHTPQQI
101: QELEAFFKEC PHPDEKQRTD LSKRLGLENK QVKFWFQNRR TQMKTQLERH ENMILRQEND KLRAENSVMK DALANPTCNN CGGPAIPGQI SLEEHQTRME
201: NARLKDELNR ICALANKFLG RPLSPLASPM ALPPSNSGLE LAIGRNGIGG PSNFGMSLPM GFDVGDGVMG SSPGMSSMGA RSPMGMMGNE IQLERSMLLD
301: LALNAMNELI KMAQPDTSLW IKSSDGRNEV LNHDEYARLF SPYVGSKPAG YVTEATRGTG VVPASSLGIV ETLMDVDRWA EMFSSMIASA ATLEVLSSGM
401: GESRSGALQV MLAEVQLLSP LVPARSLSFL RYSKQHGEGV WAVVDVSVDI GRNVTNSHPL MSCRRLPSGC VIQDMPNGFS KITWVEHSQY DESVVHQLYR
501: PLVSSGIGFG AQRWIATLLR QCDCLAILMS QIPSEDPTVI SLEGKKNMLK LAQRMTEYFC SGICASSVRK WEILNIGNLA DDMRIMARKI NMDDPTEAPG
601: IVLSASTSVW MPVSRQRVFD FLRDENLRGE WDMLSKDGPM KEMLHIAKGQ DRGNCVSILH SANSECNVLY LQESWTDASG SLVVYSPINM QALNMVMNCG
701: DSSFVALRPS GFAILPDGAS NNGDGSDGGG SCLLTVGLQM LPNGDQSTKF TMESVVTVNS LISNTIQKVK DALGVA

Best Arabidopsis Sequence Match ( AT1G05230.3 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RSANSSQSNM LILQESCTDP TASFVIYAPV DIVAMNIVLN GGDPDYVALL PSGFAILPDG NANSGAPGGD GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN
701: NLIACTVERI KASMSCETA

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.