Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00515 | Canola | nucleus | 78.17 | 79.79 |
| CDY31916 | Canola | nucleus | 77.44 | 79.05 |
| Bra028295.1-P | Field mustard | nucleus | 78.02 | 78.59 |
| KRH35356 | Soybean | nucleus | 58.08 | 52.16 |
| KRG91457 | Soybean | nucleus | 58.08 | 51.35 |
| AT4G00730.1 | Thale cress | nucleus | 55.46 | 47.51 |
| VIT_16s0100g00670.t01 | Wine grape | nucleus | 53.86 | 47.25 |
| KRH38560 | Soybean | nucleus | 52.26 | 46.26 |
| CDY39874 | Canola | plasma membrane | 12.66 | 45.31 |
| KRH09109 | Soybean | plastid | 51.09 | 45.29 |
| AT3G61150.1 | Thale cress | nucleus | 52.84 | 44.93 |
| AT4G04890.1 | Thale cress | nucleus | 48.33 | 44.68 |
| AT4G21750.3 | Thale cress | nucleus | 48.03 | 43.31 |
| AT1G05230.5 | Thale cress | nucleus | 44.4 | 42.3 |
| AT4G25530.1 | Thale cress | nucleus | 40.61 | 40.67 |
| AT1G17920.1 | Thale cress | nucleus | 40.03 | 40.03 |
| AT1G73360.1 | Thale cress | nucleus | 41.48 | 39.47 |
| AT2G32370.1 | Thale cress | nucleus | 37.41 | 35.45 |
| AT1G79840.2 | Thale cress | nucleus, plastid | 37.26 | 32.99 |
| AT3G03260.1 | Thale cress | nucleus | 32.31 | 31.76 |
| AT4G17710.1 | Thale cress | nucleus | 32.31 | 31.31 |
| AT5G46880.3 | Thale cress | nucleus | 37.26 | 30.99 |
| AT5G17320.1 | Thale cress | nucleus | 30.42 | 29.11 |
| AT1G34650.1 | Thale cress | nucleus | 29.11 | 28.25 |
| AT5G07260.1 | Thale cress | cytosol | 19.36 | 24.58 |
| AT4G26920.1 | Thale cress | cytosol, plasma membrane, plastid | 14.56 | 21.69 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | EntrezGene:835293 | UniProt:A0A1P8BG00 | ProteinID:ANM70487.1 | ArrayExpress:AT5G52170 |
| EnsemblPlantsGene:AT5G52170 | RefSeq:AT5G52170 | TAIR:AT5G52170 | RefSeq:AT5G52170-TAIR-G | EnsemblPlants:AT5G52170.2 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008289 | Symbol:HDG7 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | RefSeq:NP_001332093.1 | PFAM:PF00046 | PFAM:PF01852 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF350 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | UniParc:UPI000848465C | SEG:seg | : | : |
Description
HDG7homeodomain GLABROUS 7 [Source:TAIR;Acc:AT5G52170]
Coordinates
chr5:+:21196602..21201595
Molecular Weight (calculated)
76236.1 Da
IEP (calculated)
5.887
GRAVY (calculated)
-0.306
Length
687 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGDLEVDMS RGDFNPSFFL GKLKDDEFES RSLSDDSFDA MSGDEDKQEQ RPKKKKRKTK YHRHTSYQIQ ELESFFKECP HPNEKQRLEL GKKLTLESKQ
101: IKFWFQNRRT QMKTQLERHE NVILKQENEK LRLENSFLKE SMRGSLCIDC GGAVIPGEVS FEQHQLRIEN AKLKEELDRI CALANRFIGG SISLEQPSNG
201: GIGSQHLPIG HCVSGGTSLM FMDLAMEAMD ELLKLAELET SLWSSKSEKG SMNHFPGSRE TGLVLINSLA LVETLMDTNK WAEMFECIVA VASTLEVISN
301: GSDGSRNGSI LLMQAEFQVM SPLVPIKQKK FLRYCKQHGD GLWAVVDVSY DINRGNENLK SYGGSKMFPS GCIIQDIGNG CSKVTWIEHS EYEESHTHSL
401: YQPLLSSSVG LGATKWLATL QRQCESFTML LSSEDHTECF TIGLSHAGTK SILKLAQRMK LNFYSGITAS CIHKWEKLLA ENVGQDTRIL TRKSLEPSGI
501: VLSAATSLWL PVTQQRLFEF LCDGKCRNQW DILSNGASME NTLLVPKGQQ EGSCVSLLRA AGNDQNESSM LILQETWNDV SGALVVYAPV DIPSMNTVMS
601: GGDSAYVALL PSGFSILPDG SSSSSDQFDT DGGLVNQESK GCLLTVGFQI LVNSLPTAKL NVESVETVNN LIACTIHKIR AALRIPA
101: IKFWFQNRRT QMKTQLERHE NVILKQENEK LRLENSFLKE SMRGSLCIDC GGAVIPGEVS FEQHQLRIEN AKLKEELDRI CALANRFIGG SISLEQPSNG
201: GIGSQHLPIG HCVSGGTSLM FMDLAMEAMD ELLKLAELET SLWSSKSEKG SMNHFPGSRE TGLVLINSLA LVETLMDTNK WAEMFECIVA VASTLEVISN
301: GSDGSRNGSI LLMQAEFQVM SPLVPIKQKK FLRYCKQHGD GLWAVVDVSY DINRGNENLK SYGGSKMFPS GCIIQDIGNG CSKVTWIEHS EYEESHTHSL
401: YQPLLSSSVG LGATKWLATL QRQCESFTML LSSEDHTECF TIGLSHAGTK SILKLAQRMK LNFYSGITAS CIHKWEKLLA ENVGQDTRIL TRKSLEPSGI
501: VLSAATSLWL PVTQQRLFEF LCDGKCRNQW DILSNGASME NTLLVPKGQQ EGSCVSLLRA AGNDQNESSM LILQETWNDV SGALVVYAPV DIPSMNTVMS
601: GGDSAYVALL PSGFSILPDG SSSSSDQFDT DGGLVNQESK GCLLTVGFQI LVNSLPTAKL NVESVETVNN LIACTIHKIR AALRIPA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.