Factsheet for VIT_16s0100g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0100g00670.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25530.1	VIT_16s0100g00670.t01	AT4G25530.1	17189287

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g02000.t01	Wine grape	nucleus	63.35	61.16
KRH35356	Soybean	nucleus	58.88	60.26
KRG91457	Soybean	nucleus	59.0	59.46
AT5G52170.2	Thale cress	nucleus	47.25	53.86
CDY31916	Canola	nucleus	45.98	53.49
CDY00515	Canola	nucleus	45.72	53.19
Bra028295.1-P	Field mustard	nucleus	46.23	53.08
KRH38560	Soybean	nucleus	51.34	51.8
KRH09109	Soybean	plastid	51.21	51.74
VIT_10s0116g00680.t01	Wine grape	nucleus	46.74	50.41
VIT_12s0059g02310.t01	Wine grape	nucleus	46.36	47.95
VIT_17s0053g00780.t01	Wine grape	nucleus	42.02	46.34
CDX89415	Canola	cytosol, mitochondrion	9.58	42.13
VIT_09s0002g04340.t01	Wine grape	nucleus	40.23	42.0
CDY39874	Canola	plasma membrane	10.22	41.67
VIT_09s0018g02100.t01	Wine grape	nucleus	4.09	41.56
VIT_02s0012g02030.t01	Wine grape	nucleus	40.49	39.72
VIT_04s0079g00480.t01	Wine grape	nucleus	35.89	39.36
AT4G25530.1	Thale cress	nucleus	33.97	38.78
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	11.37	37.55
VIT_13s0067g01580.t01	Wine grape	nucleus	4.73	33.04
CDX89416	Canola	nucleus	27.08	32.67
Bra013898.1-P	Field mustard	nucleus	25.93	32.58
CDX94443	Canola	cytosol	25.54	31.85

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100267477	wikigene:100267477	MapMan:15.5.3.3	ProteinID:CCB56461	ProteinID:CCB56461.1
ncoils:Coil	UniProt:F6HP55	EMBL:FN596000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
EntrezGene:LOC100267477	wikigene:LOC100267477	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF520	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI0002108826	ArrayExpress:VIT_16s0100g00670	EnsemblPlantsGene:VIT_16s0100g00670	EnsemblPlants:VIT_16s0100g00670.t01
RefSeq:XP_003634081	RefSeq:XP_003634081.1	RefSeq:XP_019081402.1	RefSeq:XP_019081403.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:16144827..16148486

Molecular Weight (calculated)

86652.4 Da

IEP (calculated)

6.221

GRAVY (calculated)

-0.213

Length

783 amino acids

Sequence
(BLAST)

001: MEDQHERVPV DGRVLVEEKV PVEQLVPVKR VPVEERFHLE ERVPVEERVL VEGRIPVEEN FDPSVMGRIN EDGYESMSGS GNLDGGLEDE QETLVLERPA
101: KKLKYHRHTQ EQINELETCF KEWPHPDEKQ RLDLSRKLNL EPRQVKFWFQ NRRTQMKNQL ERHENVMLRQ ENDKLRVENV AIKDAVRNPI CNHCGGVAML
201: GNITIEENQL RVENAQLRDE LSRICGLAEK FLGRPVTPLA SPIALPRPSS NLELEVAGNG FGGLNSGGTP LPMGPLTRPG MMGVEKPFNS SVFVELAVTA
301: MDELLRLAQA DSPIWMTSLD GGKETLNPVE YMRTFSPCIG LKPSGFVTEA SRETGMVMIN SLALVETLMD GSRWAQMFPC VIAKASTTDV LSSGIGRTRH
401: GALQLMHAEL QVLSPLVPVR QVKFLRFCKQ HGEGLWAVVD VSIDTALDGA SINSFVNCRR LLSGCVVQDL SNGYTRVTWI EHSEYDESAV HYLYRSLLSS
501: GLGFGALRWL ATLQRQCESI AILLSSTVPC EDHPVLTQAG RRSLLQLTNR MRDNFCAGVC ASTVRMWNKL HVASLGEDVK VMTRKSMNIP GEPPGVILSA
601: ATSVWMPIMH QQLFNFLRDE RQRSKWDILS NGGPMQEMIH IPKGQTSSNC VSLLRPNARN QNDNTMLILQ ETWADASGSL IVYAPLDVAS MRAVMTGGDS
701: SFVALLPSGF AIVPDGSSGY GDDWSGKLAR GSSNKGSGSL LTVAFQILVN SLPMAKLNVE SVETVNSLLS CTINKIKSAV SSA

Best Arabidopsis Sequence Match ( AT4G00730.1 )
(BLAST)

001: MNFGSLFDNT PGGGSTGARL LSGLSYGNHT AATNVLPGGA MAQAAAAASL FSPPLTKSVY ASSGLSLALE QPERGTNRGE ASMRNNNNVG GGGDTFDGSV
101: NRRSREEEHE SRSGSDNVEG ISGEDQDAAD KPPRKKRYHR HTPQQIQELE SMFKECPHPD EKQRLELSKR LCLETRQVKF WFQNRRTQMK TQLERHENAL
201: LRQENDKLRA ENMSIREAMR NPICTNCGGP AMLGDVSLEE HHLRIENARL KDELDRVCNL TGKFLGHHHN HHYNSSLELA VGTNNNGGHF AFPPDFGGGG
301: GCLPPQQQQS TVINGIDQKS VLLELALTAM DELVKLAQSE EPLWVKSLDG ERDELNQDEY MRTFSSTKPT GLATEASRTS GMVIINSLAL VETLMDSNRW
401: TEMFPCNVAR ATTTDVISGG MAGTINGALQ LMNAELQVLS PLVPVRNVNF LRFCKQHAEG VWAVVDVSID PVRENSGGAP VIRRLPSGCV VQDVSNGYSK
501: VTWVEHAEYD ENQIHQLYRP LLRSGLGFGS QRWLATLQRQ CECLAILISS SVTSHDNTSI TPGGRKSMLK LAQRMTFNFC SGISAPSVHN WSKLTVGNVD
601: PDVRVMTRKS VDDPGEPPGI VLSAATSVWL PAAPQRLYDF LRNERMRCEW DILSNGGPMQ EMAHITKGQD QGVSLLRSNA MNANQSSMLI LQETCIDASG
701: ALVVYAPVDI PAMHVVMNGG DSSYVALLPS GFAVLPDGGI DGGGSGDGDQ RPVGGGSLLT VAFQILVNNL PTAKLTVESV ETVNNLISCT VQKIRAALQC
801: ES

Arabidopsis Description

ANL2Homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.