CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91457
KRH09109
KRH35356
KRH38560

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25530.1	KRG91457	AT4G25530.1	17189287
AT4G25530.1	KRH09109	AT4G25530.1	17189287
AT4G25530.1	KRH35356	AT4G25530.1	17189287
AT4G25530.1	KRH38560	AT4G25530.1	17189287

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91457	Soybean	nucleus	97.25	95.75
KRH09109	Soybean	plastid	70.07	69.16
KRH38560	Soybean	nucleus	69.28	68.3
KRH40539	Soybean	nucleus	67.32	62.8
KRH00641	Soybean	nucleus	67.32	62.65
KRH48236	Soybean	nucleus	66.14	61.04
KRH65144	Soybean	nucleus	65.36	59.81
VIT_16s0100g00670.t01	Wine grape	nucleus	60.26	58.88
AT5G52170.2	Thale cress	nucleus	52.16	58.08
KRH13175	Soybean	cytosol	12.94	55.93
CDY31916	Canola	nucleus	49.15	55.87
CDY00515	Canola	nucleus	48.89	55.57
Bra028295.1-P	Field mustard	nucleus	49.02	54.99
KRH56105	Soybean	nucleus	52.03	54.6
KRH25398	Soybean	plastid	52.16	52.43
KRH22554	Soybean	nucleus	52.68	51.6
KRH27601	Soybean	nucleus	49.28	51.5
KRH26803	Soybean	nucleus	52.42	51.34
KRH77881	Soybean	nucleus	48.76	51.03
PGSC0003DMT400037055	Potato	nucleus	53.07	50.0
Solyc03g026070.2.1	Tomato	nucleus	50.98	48.33
KRG91238	Soybean	nucleus	44.44	46.51
KRH38939	Soybean	nucleus	43.4	45.98
KRH09477	Soybean	nucleus	42.88	45.68
CDX89415	Canola	cytosol, mitochondrion	10.59	45.51
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	17.91	45.07
KRH60596	Soybean	nucleus	41.83	44.88
KRH41898	Soybean	nucleus	42.22	44.8
PGSC0003DMT400076898	Potato	cytosol	28.89	44.65
KRH35579	Soybean	nucleus	45.36	44.6
Solyc06g035940.2.1	Tomato	nucleus	38.69	43.79
PGSC0003DMT400042908	Potato	nucleus	28.37	43.57
PGSC0003DMT400028197	Potato	cytosol	18.69	42.94
Solyc06g050160.2.1	Tomato	nucleus	36.47	42.73
PGSC0003DMT400062468	Potato	cytosol	19.87	42.58
KRH44348	Soybean	nucleus	41.44	42.38
KRH47277	Soybean	nucleus	41.57	42.34
PGSC0003DMT400076902	Potato	nucleus	36.99	42.24
PGSC0003DMT400080861	Potato	nucleus	25.23	42.05
PGSC0003DMT400086035	Potato	nucleus	36.08	42.01
KRH23432	Soybean	plastid	41.57	41.73
KRH09884	Soybean	plastid	40.91	41.68
PGSC0003DMT400092271	Potato	nucleus	14.38	41.51
AT4G25530.1	Thale cress	nucleus	36.34	40.52
PGSC0003DMT400028195	Potato	nucleus	20.13	40.42
KRH74360	Soybean	nucleus	40.78	39.54
KRH39579	Soybean	nucleus	40.91	39.12
CDY39874	Canola	plasma membrane	9.54	38.02
KRH36827	Soybean	nucleus	34.12	36.81
KRH11810	Soybean	nucleus	33.99	36.47
CDX89416	Canola	nucleus	29.67	34.98
Bra013898.1-P	Field mustard	nucleus	28.37	34.83
CDX94443	Canola	cytosol	27.45	33.44
KRH22254	Soybean	cytosol	22.61	32.34
KRH36826	Soybean	nucleus	29.8	31.98
KRH42428	Soybean	nucleus	30.07	30.38
KRH27078	Soybean	extracellular, golgi, peroxisome	12.29	28.48
KRH42429	Soybean	cytosol	24.44	25.62

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100794400	MapMan:15.5.3.3	EMBL:ACUP02006668	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G238100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:K7LL44	EnsemblPlants:KRH35356	ProteinID:KRH35356
ProteinID:KRH35356.1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF520	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START_lipid-bd_dom	UniParc:UPI0002961BC6	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:46668214..46673206

Molecular Weight (calculated)

83885.5 Da

IEP (calculated)

6.053

GRAVY (calculated)

-0.282

Length

765 amino acids

Sequence
(BLAST)

001: MQNSSSFSYS TQRKMEGPSE IGLIGENFDA GLMGRMRDDE YESRSGSDNF EGASGDDQDG GDDQPQRKKR YHRHTPHQIQ ELEAFFKECP HPDEKQRLDL
101: SKRLALENKQ VKFWFQNRRT QMKTQLERHE NIMLRQENDK LRAENSLMKD AMSNPVCNNC GGPAIPGQIS FEEHQIRIEN ARLKDELNRI CALANKFLGK
201: PISSLTNPMA LPTSNSGLEL GIGRNGIGGS STLGTPLPMG LDLGDGVLGT QPAMPGIRPA LGLMGNEVQL ERSMLIDLAL AAMEELLKMT QAESPLWIKS
301: LDGEKEMFNH EEYARLFSPC IGPKPTGYIT EATRETGIVI INSLALVETL MDANRWAEMF PSMIARAINL DVISNGMGGT RNGALQVMHA EVQLLSPLVP
401: VRQVRFIRFC KQHAEGVWAV VDVSIEIGHD AANAQPVMSC RRLPSGCIVQ DMPNGYSKVT WLEHWEYDEN VVHQLYRPLL SSGVGFGAHR WIATLQRQCE
501: CLAILMSSSI SSDDHTALSQ AGRRSMLKLA QRMTSNFCSG VCASSARKWD SLHIGTLGDD MKVMTRKNVD DPGEPPGIVL SAATSVWVPV SRQRLFDFLR
601: DERLRSEWDI LSNGGPMQEM VHIAKGQGHG NCVSLLRANA VNANDSSMLI LQETWMDASC SVVVYAPVDV QSLNVVMSGG DSAYVALLPS GFAILPDGHC
701: NDNGCNGTLQ KGGGGNDGGG SLLTVGFQIL VNSLPTAKLT VESVDTVNNL ISCTIQKIKA SLRVA

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.