CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96225
KRH09477
KRH38939
KRH41898
KRH60596
KRH67971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17710.1	KRH09477	AT1G73360.1	21798944
AT4G17710.1	KRH38939	AT1G73360.1	21798944
AT4G17710.1	KRH41898	AT1G73360.1	21798944
AT4G17710.1	KRH60596	AT1G73360.1	21798944
AT4G17710.1	KRG96225	AT3G11590.1	21798944
AT4G17710.1	KRH67971	AT3G11590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74360	Soybean	nucleus	93.5	94.8
VIT_02s0012g02030.t01	Wine grape	nucleus	74.5	74.69
PGSC0003DMT400006155	Potato	nucleus	64.5	67.54
Solyc08g076370.2.1	Tomato	nucleus	69.12	65.68
GSMUA_Achr5P14100_001	Banana	nucleus	60.5	64.02
GSMUA_Achr4P19010_001	Banana	nucleus	60.75	60.67
AT5G46880.3	Thale cress	nucleus	59.12	57.26
CDY43458	Canola	nucleus	57.5	56.65
Bra017519.1-P	Field mustard	nucleus	57.5	56.37
CDY03177	Canola	nucleus	57.88	56.05
CDY33492	Canola	nucleus	55.0	55.28
Bra024984.1-P	Field mustard	nucleus	54.75	55.09
CDX77711	Canola	nucleus	56.25	54.68
Os10t0575600-01	Rice	nucleus	59.25	53.74
KXG38837	Sorghum	nucleus	58.75	53.29
AT4G17710.1	Thale cress	nucleus	47.0	53.03
TraesCS1D01G197300.1	Wheat	nucleus	58.5	53.0
TraesCS1A01G193400.1	Wheat	nucleus, plastid	57.75	52.92
HORVU1Hr1G050620.2	Barley	nucleus	58.38	52.77
Zm00001d030069_P004	Maize	nucleus	58.12	52.6
TraesCS1B01G208400.1	Wheat	nucleus	58.5	52.58
CDY08866	Canola	nucleus	47.75	51.9
KRH09477	Soybean	nucleus	46.25	51.53
KRH38939	Soybean	nucleus	46.5	51.52
Bra021035.1-P	Field mustard	nucleus	47.0	51.23
CDX76559	Canola	nucleus	47.0	51.23
KRH60596	Soybean	nucleus	44.75	50.21
KRH41898	Soybean	nucleus	44.88	49.79
KRH56105	Soybean	nucleus	41.12	45.13
KRH13175	Soybean	cytosol	9.88	44.63
KRH77881	Soybean	nucleus	40.62	44.46
KRH27601	Soybean	nucleus	40.5	44.26
KRH25398	Soybean	plastid	41.75	43.89
KRH26803	Soybean	nucleus	42.12	43.15
KRH22554	Soybean	nucleus	42.0	43.02
KRH48236	Soybean	nucleus	42.75	41.25
KRH65144	Soybean	nucleus	43.0	41.15
KRH40539	Soybean	nucleus	42.0	40.98
KRH35356	Soybean	nucleus	39.12	40.91
KRH00641	Soybean	nucleus	42.0	40.88
KRG91457	Soybean	nucleus	39.38	40.54
KRG91238	Soybean	nucleus	36.88	40.36
KRH11810	Soybean	nucleus	35.62	39.97
KRH09109	Soybean	plastid	38.0	39.23
KRH38560	Soybean	nucleus	37.38	38.53
KRH36827	Soybean	nucleus	33.88	38.22
KRH35579	Soybean	nucleus	36.88	37.92
KRH09884	Soybean	plastid	35.12	37.42
KRH44348	Soybean	nucleus	34.88	37.3
KRH47277	Soybean	nucleus	35.0	37.28
KRH23432	Soybean	plastid	35.5	37.27
KRH36826	Soybean	nucleus	30.25	33.94
KRH42428	Soybean	nucleus	29.25	30.91
KRH22254	Soybean	cytosol	19.62	29.35
KRH27078	Soybean	extracellular, golgi, peroxisome	11.25	27.27
KRH42429	Soybean	cytosol	24.88	27.26

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100812829	MapMan:15.5.3.3	Gene3D:3.30.530.20	EMBL:ACUP02005943	EnsemblPlantsGene:GLYMA_09G207500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:K7LF40	EnsemblPlants:KRH39579
ProteinID:KRH39579	ProteinID:KRH39579.1	PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF267	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689
SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI00023C8D0B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:-:43190835..43197715

Molecular Weight (calculated)

88984.8 Da

IEP (calculated)

5.916

GRAVY (calculated)

-0.387

Length

800 amino acids

Sequence
(BLAST)

001: MYGDCQVMSS MGGNVVVNPD TLFSSSIQNS SFNFIPTMPF QPFPSMKEED GILRGKEEVE SGSGSEQLVE DKSGNEQESH EQPTKKKRYH RHTARQIQEM
101: EALFKECPHP DDKQRLKLSH ELGLKPRQVK FWFQNRRTQM KAQQDRADNV ILRAENESLK SENYRLQAAL RNVICPNCGG PCIMGADMGL DEHQVRIENA
201: RLREELERVC CLTTRYTGRP IQTMATGPTL MAPSLDLDMS IYPRHFADTI APCTEMIPVP MLPPEASPFS EGGILMEEEK SLTLELAASS MAELVKMCQT
301: NEPLWIRSTE SEREVLNFEE HARMFAWPQN LKHRSELRTE ASRDTSVVIM NSVTLVDAFL DAQKWMELFP TIVSRAKTVQ IISSGASGLA SGTLQLMYAE
401: FQVLSPLVST RETHFLRYCQ QNAEEGTWAI VDFPVDSFHQ NFHPSYPRYC RRSSGCVIQD MPNGYSRVTW VEHAKVEEKP VHQIFCNYVY SGMAFGAQRW
501: LGVLQRQCER VASLMARNIS DLGAIPSPEA RKNLMKLAQR MIKTFSLNMS TSGGQSWTAI SDSPEDTVRI TTRKITEPGQ PNGVILSAVS TTWLPYSHTK
601: VFDLLRDERR RSQMDALSNG NSLNEVAHIA NGSHPGNCIS LLRINVASNS SQNVELMLQE NCTDQSGSIV VYTTIDVDSI QLAMSGEDPS CIALLPQGFK
701: IVPMSSPPNN VDTPIIDAAT NSSSEPPPSL NNNNSGGCLL TMGLQVLAST IPSAKLNLSS VTAINNHLCN TLHQIEAALS SSSSHENGNG SFLCTEPTKQ

Best Arabidopsis Sequence Match ( AT4G04890.1 )
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Arabidopsis Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.