Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH41898 | Soybean | nucleus | 95.37 | 94.31 |
| Os06t0208100-00 | Rice | nucleus | 14.87 | 82.17 |
| KRH38939 | Soybean | nucleus | 82.05 | 81.02 |
| KRH09477 | Soybean | nucleus | 81.35 | 80.78 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 76.58 | 76.9 |
| Solyc03g098200.2.1 | Tomato | nucleus | 71.81 | 71.01 |
| PGSC0003DMT400069312 | Potato | nucleus | 68.02 | 67.83 |
| Solyc06g072310.2.1 | Tomato | nucleus | 67.74 | 67.36 |
| GSMUA_Achr10P... | Banana | nucleus | 62.83 | 63.01 |
| AT1G73360.1 | Thale cress | nucleus | 63.25 | 62.47 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 59.61 | 62.04 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 59.47 | 61.9 |
| AT1G17920.1 | Thale cress | nucleus | 59.61 | 61.86 |
| Zm00001d018225_P001 | Maize | nucleus | 59.89 | 61.71 |
| CDX72984 | Canola | nucleus | 61.71 | 61.54 |
| Zm00001d052133_P001 | Maize | nucleus | 60.17 | 61.46 |
| Bra015996.1-P | Field mustard | nucleus | 61.71 | 61.37 |
| CDX96471 | Canola | nucleus | 61.71 | 61.28 |
| CDX96744 | Canola | nucleus | 57.78 | 61.22 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 51.75 | 61.19 |
| EES05874 | Sorghum | nucleus | 60.59 | 61.1 |
| CDY26204 | Canola | nucleus | 54.56 | 61.07 |
| CDX68229 | Canola | nucleus | 60.03 | 60.88 |
| Bra003846.1-P | Field mustard | nucleus | 59.89 | 60.57 |
| Os06t0207966-00 | Rice | plastid | 22.3 | 60.46 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 59.05 | 60.4 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 62.41 | 60.22 |
| CDY19185 | Canola | nucleus | 57.5 | 60.12 |
| Bra016578.1-P | Field mustard | nucleus | 57.64 | 60.09 |
| Zm00001d044973_P001 | Maize | nucleus | 57.92 | 59.94 |
| CDY11109 | Canola | nucleus | 59.61 | 59.86 |
| CDX83884 | Canola | nucleus | 57.5 | 59.85 |
| Zm00001d037140_P004 | Maize | nucleus | 57.64 | 59.83 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 61.57 | 59.65 |
| CDY26205 | Canola | nucleus | 57.64 | 59.57 |
| Bra025938.1-P | Field mustard | nucleus | 57.78 | 59.37 |
| EER89393 | Sorghum | nucleus | 58.06 | 59.14 |
| CDY42097 | Canola | nucleus | 41.8 | 57.64 |
| GSMUA_Achr10P... | Banana | nucleus | 54.98 | 57.48 |
| KRH13175 | Soybean | cytosol | 12.76 | 51.41 |
| TraesCS7B01G072700.1 | Wheat | nucleus | 51.05 | 49.86 |
| TraesCS7A01G167900.1 | Wheat | nucleus | 50.63 | 49.79 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 51.05 | 49.73 |
| KRH56105 | Soybean | nucleus | 49.65 | 48.56 |
| KRH25398 | Soybean | plastid | 49.79 | 46.65 |
| KRH77881 | Soybean | nucleus | 47.83 | 46.65 |
| KRH27601 | Soybean | nucleus | 47.27 | 46.04 |
| KRH74360 | Soybean | nucleus | 50.35 | 45.5 |
| KRH22554 | Soybean | nucleus | 49.65 | 45.33 |
| KRH26803 | Soybean | nucleus | 49.65 | 45.33 |
| KRH11810 | Soybean | nucleus | 45.16 | 45.16 |
| KRH39579 | Soybean | nucleus | 50.21 | 44.75 |
| KRH36827 | Soybean | nucleus | 44.46 | 44.71 |
| KRG91238 | Soybean | nucleus | 43.76 | 42.68 |
| KRH35356 | Soybean | nucleus | 44.88 | 41.83 |
| KRH40539 | Soybean | nucleus | 48.11 | 41.83 |
| KRG91457 | Soybean | nucleus | 45.02 | 41.31 |
| KRH48236 | Soybean | nucleus | 47.97 | 41.25 |
| KRH00641 | Soybean | nucleus | 47.55 | 41.24 |
| KRH65144 | Soybean | nucleus | 47.69 | 40.67 |
| KRH35579 | Soybean | nucleus | 44.32 | 40.62 |
| KRH38560 | Soybean | nucleus | 42.22 | 38.79 |
| KRH09109 | Soybean | plastid | 41.66 | 38.32 |
| KRH36826 | Soybean | nucleus | 38.01 | 38.01 |
| KRH47277 | Soybean | nucleus | 39.83 | 37.82 |
| KRH44348 | Soybean | nucleus | 39.41 | 37.57 |
| KRH23432 | Soybean | plastid | 39.97 | 37.4 |
| KRH09884 | Soybean | plastid | 39.27 | 37.28 |
| KRH42428 | Soybean | nucleus | 38.71 | 36.46 |
| KRH42429 | Soybean | cytosol | 32.82 | 32.05 |
| KRH22254 | Soybean | cytosol | 23.14 | 30.84 |
| KRH27078 | Soybean | extracellular, golgi, peroxisome | 13.04 | 28.18 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.56 | 27.98 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 11.08 | 27.62 |
| TraesCSU01G244000.1 | Wheat | nucleus | 7.43 | 25.73 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100796042 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | EMBL:ACUP02003368 | EnsemblPlantsGene:GLYMA_05G248800 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_dom | UniProt:I1K583 | InterPro:IPR001356 | InterPro:IPR002913 | InterPro:IPR023393 | EnsemblPlants:KRH60596 |
| ProteinID:KRH60596 | ProteinID:KRH60596.1 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF236 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI000233A84F | : | : |
Description
hypothetical protein
Coordinates
chr5:+:42196163..42199961
Molecular Weight (calculated)
79309.4 Da
IEP (calculated)
6.813
GRAVY (calculated)
-0.363
Length
713 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYGGSQSPG EQDGSDSQER RKRYHRHTAN QIQRLESMFK ECPHPDEKQR LQLSRELGLA PRQIKFWFQN RRTQMKAQHE RADNCALRAD NDKIRCENIA
101: IREALKNVIC PSCGGPPLND DSYFNDHKLR LENAHLKEEL DRVSSIAAKY IGRPISQLPP VQPIHISSLD LSMASFGNQG MVGPAPAPSL NLDLLPAGTS
201: SSMPNLPYQP PCLSDMDKSL MSDIASNAME EFLRLVQTNE PLWLKSNVDR RDVLSSDAYD RMFSKPNTRS KNPNVRIEAS RDSGVVLLNS LALVDMFMDP
301: NKWIQLFPTI VSVARTIQVI SSGVMGSCSG SLQLMYQELQ VLSPLVSTRE FYFLRYCQQI EQGTWAVMDV SYDFPQDSHF APQFRSHRCP SGCLIQDMPD
401: GHSKITWIEH VEIEDKTLPH RLYRNLIYSG MAFGAERWLT TLQRMCERFT YLMATSNPTR DNLGGVISSP EGKRSMMKLA QRMVTDFCAS ISTSSGHRWT
501: TLSGLNEIVV RVTVHKSSDP GQPNGVVLSA ATTIWLPTPP HTVFNFFKDE NKRPQWDVLS NGNAVQEVAN IANGLHPGNC ISVLRAFNNS QNMLILQESC
601: IDSYGSLVVY CPVDLPSINT AVSGEDPSYI PLLPNGFTIL PDGQPDQEGD GASTSSNTNR NIARSGGSLV TIAFQILVSS LPSAKVNMES VTTVNNLIGS
701: TVQQIKSSLS CPT
101: IREALKNVIC PSCGGPPLND DSYFNDHKLR LENAHLKEEL DRVSSIAAKY IGRPISQLPP VQPIHISSLD LSMASFGNQG MVGPAPAPSL NLDLLPAGTS
201: SSMPNLPYQP PCLSDMDKSL MSDIASNAME EFLRLVQTNE PLWLKSNVDR RDVLSSDAYD RMFSKPNTRS KNPNVRIEAS RDSGVVLLNS LALVDMFMDP
301: NKWIQLFPTI VSVARTIQVI SSGVMGSCSG SLQLMYQELQ VLSPLVSTRE FYFLRYCQQI EQGTWAVMDV SYDFPQDSHF APQFRSHRCP SGCLIQDMPD
401: GHSKITWIEH VEIEDKTLPH RLYRNLIYSG MAFGAERWLT TLQRMCERFT YLMATSNPTR DNLGGVISSP EGKRSMMKLA QRMVTDFCAS ISTSSGHRWT
501: TLSGLNEIVV RVTVHKSSDP GQPNGVVLSA ATTIWLPTPP HTVFNFFKDE NKRPQWDVLS NGNAVQEVAN IANGLHPGNC ISVLRAFNNS QNMLILQESC
601: IDSYGSLVVY CPVDLPSINT AVSGEDPSYI PLLPNGFTIL PDGQPDQEGD GASTSSNTNR NIARSGGSLV TIAFQILVSS LPSAKVNMES VTTVNNLIGS
701: TVQQIKSSLS CPT
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.