Factsheet for PGSC0003DMT400069312

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006155
PGSC0003DMT400032975
PGSC0003DMT400050381
PGSC0003DMT400062138
PGSC0003DMT400067905

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73360.1	PGSC0003DMT400006155	AT4G17710.1	21798944
AT1G73360.1	PGSC0003DMT400032975	AT5G38420.1	21798944
AT1G73360.1	PGSC0003DMT400050381	AT5G38420.1	21798944
AT1G73360.1	PGSC0003DMT400062138	AT5G38420.1	21798944
AT1G73360.1	PGSC0003DMT400067905	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g072310.2.1	Tomato	nucleus	97.34	97.07
Os06t0208100-00	Rice	nucleus	13.57	75.19
VIT_17s0053g00780.t01	Wine grape	nucleus	73.57	74.08
KRH38939	Soybean	nucleus	72.87	72.16
KRH09477	Soybean	nucleus	72.45	72.14
KRH60596	Soybean	nucleus	67.83	68.02
KRH41898	Soybean	nucleus	68.11	67.55
AT1G73360.1	Thale cress	nucleus	63.22	62.6
CDX96471	Canola	nucleus	62.66	62.4
Bra015996.1-P	Field mustard	nucleus	62.52	62.34
CDX72984	Canola	nucleus	62.24	62.24
AT1G17920.1	Thale cress	nucleus	59.72	62.15
CDX96744	Canola	nucleus	58.18	61.81
CDX68229	Canola	nucleus	60.7	61.74
CDY26204	Canola	nucleus	54.97	61.7
Bra003846.1-P	Field mustard	nucleus	60.42	61.28
CDY19185	Canola	nucleus	58.32	61.14
CDY11109	Canola	nucleus	60.14	60.56
Bra016578.1-P	Field mustard	nucleus	57.9	60.53
CDX83884	Canola	nucleus	57.9	60.44
CDY26205	Canola	nucleus	58.18	60.29
TraesCS6A01G324500.1	Wheat	nucleus	57.48	60.0
GSMUA_Achr10P...	Banana	nucleus	59.58	59.92
Zm00001d052133_P001	Maize	nucleus	58.32	59.74
TraesCS6D01G304300.1	Wheat	nucleus	57.2	59.71
EES05874	Sorghum	nucleus	59.02	59.69
Bra025938.1-P	Field mustard	nucleus	57.9	59.65
Zm00001d018225_P001	Maize	nucleus	57.48	59.39
CDY42097	Canola	nucleus	42.38	58.61
TraesCS6B01G354900.3	Wheat	nucleus	57.06	58.54
GSMUA_Achr2P15140_001	Banana	nucleus	60.14	58.19
Os06t0207966-00	Rice	plastid	21.4	58.17
GSMUA_Achr7P11310_001	Banana	nucleus	58.74	57.07
GSMUA_Achr6P05990_001	Banana	nucleus	47.97	56.88
Zm00001d044973_P001	Maize	nucleus	54.27	56.31
Zm00001d037140_P004	Maize	nucleus	53.99	56.19
GSMUA_Achr10P...	Banana	nucleus	53.01	55.57
EER89393	Sorghum	nucleus	54.27	55.43
TraesCS7B01G072700.1	Wheat	nucleus	50.49	49.45
TraesCS7A01G167900.1	Wheat	nucleus	50.07	49.38
TraesCS7D01G168700.1	Wheat	nucleus	50.35	49.18
PGSC0003DMT400061859	Potato	nucleus	46.71	48.48
PGSC0003DMT400029291	Potato	nucleus	46.99	48.21
PGSC0003DMT400005277	Potato	nucleus	45.45	44.34
PGSC0003DMT400006155	Potato	nucleus	46.43	43.46
PGSC0003DMT400071377	Potato	nucleus	49.51	43.12
PGSC0003DMT400019986	Potato	nucleus	48.11	42.52
PGSC0003DMT400048971	Potato	nucleus	32.31	40.67
PGSC0003DMT400094124	Potato	nucleus	41.12	38.89
PGSC0003DMT400085057	Potato	cytosol	25.45	38.08
PGSC0003DMT400034503	Potato	cytosol, nucleus	36.08	37.89
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	15.94	37.5
PGSC0003DMT400062468	Potato	cytosol	18.6	37.25
PGSC0003DMT400076898	Potato	cytosol	25.73	37.17
PGSC0003DMT400038820	Potato	extracellular	18.88	37.09
PGSC0003DMT400051268	Potato	cytosol	25.45	36.47
PGSC0003DMT400006770	Potato	nucleus	39.16	36.27
PGSC0003DMT400042908	Potato	nucleus	25.17	36.14
PGSC0003DMT400028197	Potato	cytosol	16.64	35.74
PGSC0003DMT400080861	Potato	nucleus	22.52	35.08
PGSC0003DMT400037055	Potato	nucleus	39.72	34.98
PGSC0003DMT400051266	Potato	cytosol	18.88	34.7
PGSC0003DMT400086035	Potato	nucleus	31.61	34.4
PGSC0003DMT400028195	Potato	nucleus	17.48	32.81
PGSC0003DMT400076902	Potato	nucleus	30.35	32.39
PGSC0003DMT400036411	Potato	nucleus	23.5	32.0
PGSC0003DMT400037397	Potato	cytosol	21.68	31.57
PGSC0003DMT400092271	Potato	nucleus	11.61	31.32
PGSC0003DMT400095083	Potato	cytosol	5.17	30.58
PGSC0003DMT400095329	Potato	cytosol	11.61	30.07
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	14.41	29.26
TraesCSU01G150000.1	Wheat	nucleus	8.81	28.9
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	10.35	25.87
TraesCSU01G244000.1	Wheat	nucleus	7.41	25.73

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102595532	MapMan:15.5.3.3	Gene3D:3.30.530.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR002913	InterPro:IPR023393	UniProt:M1CK98	PFAM:PF00046	PFAM:PF01852	EnsemblPlantsGene:PGSC0003DMG400026962
PGSC:PGSC0003DMG400026962	EnsemblPlants:PGSC0003DMT400069312	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF490	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI000294FF9F	RefSeq:XP_006347370.1	SEG:seg	:	:

Description

Homeodomain protein HOX3 [Source:PGSC_GENE;Acc:PGSC0003DMG400026962]

Coordinates

chr6:-:53065694..53069826

Molecular Weight (calculated)

78681.9 Da

IEP (calculated)

6.456

GRAVY (calculated)

-0.303

Length

715 amino acids

Sequence
(BLAST)

001: MEYGTGGGGG GGGGASSSGG DATDAHRKKK RFHRHTAHQI QSLESVFKEC PHPDEKIRLQ LSRDLGLAPR QIKFWFQNRR TQLKSQHERA DNSALRSEND
101: RIRCENIAIR EAIKNVICPS CGGPPVTEDT YFDEQKLRME NLQLKEELDK ISSIAAKYMG RPISQLPPVQ PVHLSSLNLM SMPNFGLTGP SLDLDLLPGS
201: LSTYPNLPCP TLNISDMDKS LMADIAGNAM EELIRLLQTN EPLWTKSTAD GRDVLDIDNY DQIFPKANSS LKNPNVRVEA SRQSGVVIMN GLALVDMFMD
301: VNKWVEFFPT IVSKARTLEV ISCGMMGSRS STLQLMYEEQ QVLSPLVPTR QFYFLRFCQQ IETGSWAIVD VSYDITQENM YPPSSCKVHK LPSGCLIQDM
401: PNGYSKVTWL EHVEVEEKGS IHRLYRDLIY SGMAFGAERW LGSLQRLCER YACLMVSGNS SRELGGVIPS PEGKKSMMKV AQRMVSSFCA SINPSNGHQW
501: NNISTLDEFE VRATLQKCTD PGQPNGVVIS AASTIWLPVP PQHVFNFLRD ERTRPQWDVL SNQNPVQEVA HIANGSHPGN SISVLRAYNT SQNNMLILQE
601: SCIDSSGSLV VYSPVDLQSI NIAMSGEDTT YIPLLPSGFT ISQDGRGSNE ALSMNNGSTM GGAGAGGSLV TVVFQILVSS LSSSAKMSPE SVNTVNNLIG
701: NTIHQIKTAL NCSTS

Best Arabidopsis Sequence Match ( AT1G73360.1 )
(BLAST)

001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA

Arabidopsis Description

HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.