Factsheet for PGSC0003DMT400094124

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005830.1.1	Tomato	nucleus	81.61	82.16
PGSC0003DMT400061859	Potato	nucleus	58.6	64.3
PGSC0003DMT400029291	Potato	nucleus	55.95	60.69
PGSC0003DMT400005277	Potato	nucleus	57.14	58.94
PGSC0003DMT400048971	Potato	nucleus	39.95	53.17
CDY19129	Canola	nucleus	44.31	46.08
CDY48272	Canola	nucleus	42.86	46.02
Bra021779.1-P	Field mustard	nucleus	44.18	45.88
Bra005588.1-P	Field mustard	nucleus	42.59	45.74
CDY12213	Canola	nucleus	42.99	45.65
CDY15339	Canola	nucleus	44.05	45.55
AT2G32370.1	Thale cress	nucleus	42.72	44.55
PGSC0003DMT400071377	Potato	nucleus	47.49	43.73
CDY30748	Canola	endoplasmic reticulum	33.86	43.61
PGSC0003DMT400019986	Potato	nucleus	45.77	42.77
PGSC0003DMT400069312	Potato	nucleus	38.89	41.12
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.52	39.77
PGSC0003DMT400006155	Potato	nucleus	39.68	39.27
PGSC0003DMT400006770	Potato	nucleus	39.15	38.34
PGSC0003DMT400037397	Potato	cytosol	24.47	37.68
PGSC0003DMT400076898	Potato	cytosol	23.68	36.16
PGSC0003DMT400037055	Potato	nucleus	38.36	35.71
PGSC0003DMT400095083	Potato	cytosol	5.69	35.54
PGSC0003DMT400042908	Potato	nucleus	22.62	34.34
PGSC0003DMT400062470	Potato	cytosol, nucleus, plastid	13.76	34.21
PGSC0003DMT400080861	Potato	nucleus	20.5	33.77
PGSC0003DMT400062468	Potato	cytosol	15.87	33.61
PGSC0003DMT400028197	Potato	cytosol	14.68	33.33
PGSC0003DMT400028195	Potato	nucleus	16.8	33.33
PGSC0003DMT400086035	Potato	nucleus	28.97	33.33
PGSC0003DMT400051268	Potato	cytosol	21.83	33.07
PGSC0003DMT400085057	Potato	cytosol	20.9	33.05
PGSC0003DMT400076902	Potato	nucleus	28.97	32.69
PGSC0003DMT400092271	Potato	nucleus	11.38	32.45
PGSC0003DMT400034503	Potato	cytosol, nucleus	28.97	32.16
PGSC0003DMT400095329	Potato	cytosol	11.38	31.16
PGSC0003DMT400051266	Potato	cytosol	15.74	30.59
PGSC0003DMT400038820	Potato	extracellular	14.42	29.95
PGSC0003DMT400036411	Potato	nucleus	20.37	29.33

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102588257	MapMan:15.5.3.3	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M1DTG6	PFAM:PF00046	PFAM:PF01852
EnsemblPlantsGene:PGSC0003DMG400043695	PGSC:PGSC0003DMG400043695	EnsemblPlants:PGSC0003DMT400094124	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848
PANTHER:PTHR24326	PANTHER:PTHR24326:SF349	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961
InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI0002953EDC	RefSeq:XP_006352040.1	SEG:seg	:

Description

Homeobox protein [Source:PGSC_GENE;Acc:PGSC0003DMG400043695]

Coordinates

chr12:-:6579955..6584645

Molecular Weight (calculated)

82883.1 Da

IEP (calculated)

5.504

GRAVY (calculated)

-0.348

Length

756 amino acids

Sequence
(BLAST)

001: MPAIHSRPSS SMPSLVENDE TNTGVPLDQP SNMMDSQPNS MDSGSNTSDT AMAQELGGDD HHDDQEEGVN TTRKRKRYHR HTQHQIQELE AYFKECPHPD
101: DKQRKELSRE LGLEHLQVKF WFQNKRTQMK NQLERHENSH LRVENEKMKS ELLRYKEALG NIGNISCPTC GGHRINIGDL SFDERQLRNE NARLKEEIER
201: ISSMAGRIVG KTVFPNNNNG YNSPNPVDFG VLPAYSTPQS VDGEGYNNGG GGFEDVPILS SMINGPISEI EKPFIIELVM AAMDEFVQMA HMQEPLWFPS
301: IENGTFMLNQ DEYFRVFPRG IGPRPIGFVT EATRDSSIVI MNNFNLVEIL MNVNHWSSMF SGIVSRASSV DVISTGGAGN PNGAIQVILA ETQIASPQVP
401: TRECYFARYC KLRVDGTWAV VDVSLDQLRA GPAVRSRKRP SGCLIEAAPN GCSKVTWVEH VEVDDSAVHT IYKPLVSSGL AFGAKRWLAS LDRQCDRIAS
501: AMVTPIPTND MVLSTQESRK SMMKLAERMV NSFSSGVSAT VGNHWTTLSQ GNGTDENVRV MTRKSVGDPG RPHGVVISAA TSFWLPISPK TVFDYLRDEN
601: TRTEWDILSN GGLLQEVAQI TNGTETGNCV SLLRVNSDNV NHSNMIILQE SSTDPTGSYV IYAPVDISAM NGVLNGGDPD YVALLPSGFA ILPDGPSGGR
701: GAYNHGSGGS LLTVAFQILV DLVPVAKLSL GSVATVNNLI VCTVDRIKAA LLAQPT

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.