Factsheet for Bra005588.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48272	Canola	nucleus	99.29	99.29
Bra021779.1-P	Field mustard	nucleus	66.19	64.01
AT2G32370.1	Thale cress	nucleus	54.69	53.1
Bra015401.1-P	Field mustard	nucleus	53.84	52.64
Bra032478.1-P	Field mustard	nucleus	53.27	52.16
Bra000807.1-P	Field mustard	nucleus	41.62	49.08
Bra029527.1-P	Field mustard	nucleus	49.86	47.11
Bra020872.1-P	Field mustard	nucleus	48.58	45.72
Bra038757.1-P	Field mustard	nucleus	46.45	45.1
PGSC0003DMT400048971	Potato	nucleus	35.51	44.01
Bra013556.1-P	Field mustard	nucleus	42.9	43.77
PGSC0003DMT400094124	Potato	nucleus	45.74	42.59
Bra000960.1-P	Field mustard	extracellular	6.96	41.88
Solyc12g005830.1.1	Tomato	nucleus	43.04	40.35
Solyc07g041850.1.1	Tomato	nucleus	37.22	38.53
Bra016578.1-P	Field mustard	nucleus	37.07	38.16
Bra015996.1-P	Field mustard	nucleus	38.35	37.66
Bra004934.1-P	Field mustard	nucleus	41.76	37.4
Bra025938.1-P	Field mustard	nucleus	36.51	37.03
Bra003439.1-P	Field mustard	nucleus	41.05	36.82
Bra028295.1-P	Field mustard	nucleus	35.51	36.66
Bra003846.1-P	Field mustard	nucleus	36.65	36.6
Bra037355.1-P	Field mustard	nucleus	40.91	36.46
PGSC0003DMT400033830	Potato	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	16.48	32.95
Bra003535.1-P	Field mustard	nucleus	35.09	32.93
Bra017519.1-P	Field mustard	nucleus	36.08	31.13
Bra024984.1-P	Field mustard	nucleus	34.94	30.94
Bra021035.1-P	Field mustard	nucleus	32.24	30.93
Bra023611.1-P	Field mustard	nucleus	30.54	30.5
Bra003213.1-P	Field mustard	nucleus	30.68	30.42
Bra032003.1-P	Field mustard	nucleus	29.26	29.9
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	30.54	29.74
Bra021363.1-P	Field mustard	nucleus	30.68	29.71
Bra020066.1-P	Field mustard	nucleus	28.69	29.62
Bra013898.1-P	Field mustard	nucleus	25.71	29.05
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	7.95	19.58

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra005588	EnsemblPlants:Bra005588.1	EnsemblPlants:Bra005588.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	UniProt:M4CN00	PFAM:PF00046	PFAM:PF01852
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	SMART:SM00234
SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom	UniParc:UPI00025476CB	SEG:seg

Description

AT1G05230 (E=4e-219) HDG2 | HDG2 (HOMEODOMAIN GLABROUS 2); DNA binding / transcription factor

Coordinates

chrA05:+:6373565..6377027

Molecular Weight (calculated)

78635.4 Da

IEP (calculated)

5.871

GRAVY (calculated)

-0.472

Length

704 amino acids

Sequence
(BLAST)

001: MSLPNYMEPV DDVNNNNNGE TDNNENENNN NMNGGASFGD EEFDSENQEY GNTQDPRAAK RKRYHRHTQQ QIQEMENFFK ECPHPDDNQR KELSRQLGLD
101: HLQIKFWFQN KRTQNKNHQE RHENLQLREE NTRLRADNHH FREGLANASC PNCGGPTAVG EMSFEEHHLL LENAKLTEEI RQLSEVAKYT GKAVMRYPVL
201: PTPNQAPPFE PPMITNGSLG SVKEADKPLL IELAVGAMSE LIALAQMNEP LWKEGVHGMI LDLNEYTRNL QNGLGPKPVG FRTEASRETA IVFMRHMEIV
301: HRLMDVNLWS TMFAGMVGRA ITHDTLLTGR QGNLDGTIHL MTAEFQVLSP LVSNRECYFV RYCKQHGEGL WGVVDISIDH LIPNLEPKCL RRPSGCLIQD
401: MPNRVSRVTW VEHVEVDDGG ELHAMFKHLL NSGQALGANR WLSALDRQCE RLAIMMAPNI PSIEPGGQIT VTNNAKQSLL ELVERMSRGF FDGVTTSNAD
501: IWMNLGGYTG DSVKVTTRTS LNDPGRPEGL ILCAAHSFWV PAPPTTVFDY LRDENNRVNW DVLFLGGNPQ KLTHIFNGRD NRNCVSLLRS PNTSQSEMMM
601: IEKSSTEPAA SFLVYAPVSV PSMEKVLNGG DPKYVPLLPS GFAILPDGTA QPGKAGGSLV NVAFQMLVDS YPSGSLTFSS VSTIESLILA AANKIKACFT
701: QQTP

Best Arabidopsis Sequence Match ( AT1G05230.10 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.