Factsheet for Bra020066.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44946	Canola	nucleus	91.94	96.76
Bra032003.1-P	Field mustard	nucleus	88.42	87.52
Bra021363.1-P	Field mustard	nucleus	68.33	64.1
AT3G03260.1	Thale cress	nucleus	62.61	61.09
Os06t0208100-00	Rice	nucleus	10.56	55.81
Bra023611.1-P	Field mustard	nucleus	49.56	47.94
Bra003213.1-P	Field mustard	nucleus	46.04	44.23
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	46.48	43.85
VIT_04s0079g00480.t01	Wine grape	nucleus	41.94	40.06
PGSC0003DMT400038820	Potato	extracellular	21.11	39.56
TraesCS6A01G324500.1	Wheat	nucleus	38.56	38.39
TraesCS6D01G304300.1	Wheat	nucleus	38.42	38.25
Solyc09g057530.1.1	Tomato	cytosol	7.62	37.96
Zm00001d044973_P001	Maize	nucleus	38.12	37.74
Zm00001d037140_P004	Maize	nucleus	37.98	37.7
Zm00001d018225_P001	Maize	nucleus	38.12	37.57
TraesCS6B01G354900.3	Wheat	nucleus	38.27	37.45
Zm00001d052133_P001	Maize	nucleus	38.12	37.25
Solyc10g018030.1.1	Tomato	cytosol	22.43	37.05
EER89393	Sorghum	nucleus	37.83	36.86
GSMUA_Achr6P05990_001	Banana	nucleus	32.4	36.65
EES05874	Sorghum	nucleus	37.83	36.49
GSMUA_Achr10P...	Banana	nucleus	37.98	36.43
Solyc04g025490.1.1	Tomato	cytosol	12.76	35.95
PGSC0003DMT400085057	Potato	cytosol	25.07	35.77
Os06t0207966-00	Rice	plastid	13.78	35.74
Solyc11g011940.1.1	Tomato	nucleus	37.54	35.7
GSMUA_Achr2P15140_001	Banana	nucleus	38.56	35.59
Solyc09g066070.2.1	Tomato	cytosol	22.43	35.5
Bra016578.1-P	Field mustard	nucleus	35.48	35.38
PGSC0003DMT400051268	Potato	cytosol	25.81	35.27
GSMUA_Achr10P...	Banana	nucleus	35.19	35.19
KRH36827	Soybean	nucleus	36.36	34.98
PGSC0003DMT400034503	Potato	cytosol, nucleus	34.75	34.8
KRH11810	Soybean	nucleus	36.36	34.78
TraesCS7A01G167900.1	Wheat	nucleus	36.8	34.62
TraesCS7D01G168700.1	Wheat	nucleus	36.95	34.43
Solyc09g057540.2.1	Tomato	cytosol	25.07	34.41
TraesCS7B01G072700.1	Wheat	nucleus	36.8	34.38
Bra003846.1-P	Field mustard	nucleus	35.48	34.33
Bra015996.1-P	Field mustard	nucleus	36.07	34.31
GSMUA_Achr7P11310_001	Banana	nucleus	36.95	34.24
Solyc09g060130.1.1	Tomato	cytosol	22.14	34.01
Bra000807.1-P	Field mustard	nucleus	29.77	34.0
KRH36826	Soybean	nucleus	35.48	33.94
PGSC0003DMT400051266	Potato	cytosol	19.21	33.68
Solyc09g066030.1.1	Tomato	nucleus	35.63	33.61
Solyc07g026570.1.1	Tomato	nucleus	6.89	33.33
Solyc09g066050.2.1	Tomato	cytosol	26.98	33.27
Solyc07g026560.1.1	Tomato	cytosol	23.02	33.19
Solyc09g060140.2.1	Tomato	mitochondrion	17.89	33.15
Bra025938.1-P	Field mustard	nucleus	33.28	32.71
Solyc05g015030.1.1	Tomato	cytosol	22.73	32.7
PGSC0003DMT400036411	Potato	nucleus	25.07	32.57
Bra020872.1-P	Field mustard	nucleus	35.63	32.49
Bra029527.1-P	Field mustard	nucleus	35.48	32.48
Bra000960.1-P	Field mustard	extracellular	5.57	32.48
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	33.14	32.33
Solyc09g060170.1.1	Tomato	cytosol	16.28	32.27
Solyc11g022420.1.1	Tomato	cytosol	22.58	32.15
Bra032478.1-P	Field mustard	nucleus	33.72	31.99
Bra015401.1-P	Field mustard	nucleus	33.72	31.94
Solyc08g062510.2.1	Tomato	nucleus	30.5	31.85
Solyc07g037910.1.1	Tomato	cytosol	9.82	31.75
Bra038757.1-P	Field mustard	nucleus	33.72	31.72
KRH42428	Soybean	nucleus	34.9	31.44
Solyc10g018020.1.1	Tomato	extracellular	15.25	30.95
Bra013556.1-P	Field mustard	nucleus	31.23	30.87
Solyc04g025480.1.1	Tomato	cytosol	29.03	30.23
Solyc08g062520.2.1	Tomato	cytosol	22.58	30.14
Bra028295.1-P	Field mustard	nucleus	29.18	29.18
Bra004934.1-P	Field mustard	nucleus	33.58	29.13
Bra005588.1-P	Field mustard	nucleus	29.62	28.69
Bra037355.1-P	Field mustard	nucleus	33.14	28.61
Bra003439.1-P	Field mustard	nucleus	32.26	28.03
Bra021779.1-P	Field mustard	nucleus	29.18	27.34
Bra021035.1-P	Field mustard	nucleus	29.33	27.25
KRH42429	Soybean	cytosol	28.74	26.85
Bra003535.1-P	Field mustard	nucleus	29.33	26.67
Bra017519.1-P	Field mustard	nucleus	31.23	26.1
Bra024984.1-P	Field mustard	nucleus	29.77	25.53
Bra013898.1-P	Field mustard	nucleus	21.41	23.43
TraesCSU01G150000.1	Wheat	nucleus	7.18	22.48
TraesCSU01G244000.1	Wheat	nucleus	6.3	20.87
Bra007562.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	7.48	17.83
HORVU3Hr1G022170.1	Barley	cytosol	2.35	13.45

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	EnsemblPlantsGene:Bra020066	EnsemblPlants:Bra020066.1	EnsemblPlants:Bra020066.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913
UniProt:M4DU73	PFAM:PF00046	PFAM:PF01852	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF504	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START_lipid-bd_dom
UniParc:UPI00025432EC	SEG:seg	:	:	:	:

Description

AT3G03260 (E=9e-231) HDG8 | HDG8 (HOMEODOMAIN GLABROUS 8); DNA binding / transcription factor

Coordinates

chrA02:-:4886918..4890686

Molecular Weight (calculated)

76795.4 Da

IEP (calculated)

5.740

GRAVY (calculated)

-0.308

Length

682 amino acids

Sequence
(BLAST)

001: MDYDGAGNQD NEHYTSVNAM SKEKRICHRH SPQQIQMLEA YFKECPHPNE SQRQKFCNEL NLGIDQVKFW FQNKRTQSKA QDERTSNILL RAENEKLQCE
101: NAAMLEALKN VTCPPCGGPP FGGEEREPNL HKLRLEGDSL VAAKNKYRQT MLDSLTSVQR QQTFEALTSY GTNPYNPFEQ PSSSESQTIQ PQLLSQMDIP
201: QLSETAAIAV EELKQLFLTD EALWVMSSID GTYVIDQESY EKFSHSIKHF RNLSARVESS KDVTVVPIEA TSLIDMFLDL EKWKMLFPTI VNKAEMIHTL
301: GSELPIKENC NVLQMIWEQL HILSPLVPPR EFMIVRCCQQ IGEGLWIIAD VSQHIVNSDQ VSPSCYKRPS GCLIRSLPNA HTEVSWIEHV EVDHTADTHR
401: MYRELVSGGS GYGARRWIVT LERMCERMAL SSILIMPATD WSETIPTVEG RKSVMKLGER MVKIFSEMLI MSGKIEFPQQ SKGGVRILIR MNMKPGQIPG
501: LVASAASCLS IPLTPLQVFN SLRSNDTRHQ WDVLCHGNAI TETARIFTGS SGTNYINLLQ PTPPWDIGQN MVQEPHKTMM VLQECYMDAL GGMIVYSPLD
601: MATMSIAASG EVDPLNIPIL PSGFTISSDN NRGTVLMLAF QILISDENSK TRNVSENTAD KVSRLISQTV QSIKVMLNCP PE

Best Arabidopsis Sequence Match ( AT3G03260.1 )
(BLAST)

001: MDNNGGGSSG NEQYTSGDAK QNGKRTCHRH TPQQIQRLEA YFKECPHPDE RQRNQLCREL KLEPDQIKFW FQNKRTQSKT QEDRSTNVLL RGENETLQSD
101: NEAMLDALKS VLCPACGGPP FGREERGHNL QKLRFENARL KDHRDRISNF VDQHKPNEPT VEDSLAYVPS LDRISYGING GNMYEPSSSY GPPNFQIIQP
201: RPLAETDMSL LSEIAASAVE ELKRLFLAEE QFWVKSCIDE TYVIDTESYE RFSHAVKHFS STTAHVESSK AVTVVHVEAI NLIQMFLDPE KWKELFPTIV
301: NKANTIHVLG SGLPIRGNCN VLQVMWEQLH ILSPLVPARE FMVVRCCQEI EKGIWIIADV SHRANFDFGN AACYKRPSGC LIQALPDAHS KVMWIEHVEV
401: DHKLDTHKIY RDLLSGGSGY GAKRWIVTLE RMCERMALSS IQTLPPSDRS EVITTGEARR SVMKLGERMV KNFNEMLTMS GKIDFPQQSK NGVRVSIRMN
501: IEAGQPPGIV VSASSSLAIP LTPLQVFAFL QNLDTRQQWD ILSYGTVVNE IARIVTGSSE TNCVTILRVH PTHEENNDKM VVQDSCKDDM LMLQDCYMDA
601: LGGMIVYAPM DMATMHFAVS GEVDPSHIPI LPSGFVISSD GRRSTVEDGG TLLTVAFQIL VSGKANRSRE VNEKSVDTVS ALISSTIQRI KGLLNCPEC

Arabidopsis Description

HDG8Homeobox-leucine zipper protein HDG8 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.