Factsheet for Solyc09g060140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
extracellular 1
nucleus 1
mitochondrion 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g057530.1.1	Tomato	cytosol	33.7	90.51
Solyc09g060170.1.1	Tomato	cytosol	65.22	69.77
Solyc11g022410.1.1	Tomato	extracellular	13.59	67.57
Solyc09g066070.2.1	Tomato	cytosol	76.9	65.66
Solyc09g060130.1.1	Tomato	cytosol	78.8	65.32
Solyc09g057540.2.1	Tomato	cytosol	83.42	61.77
Solyc11g022430.1.1	Tomato	cytosol	29.62	60.89
Solyc08g062520.2.1	Tomato	cytosol	75.0	54.01
Solyc11g022420.1.1	Tomato	cytosol	68.48	52.61
Solyc08g062510.2.1	Tomato	nucleus	87.77	49.46
Solyc10g018020.1.1	Tomato	extracellular	41.03	44.94
Solyc10g018030.1.1	Tomato	cytosol	49.18	43.83
Solyc09g066050.2.1	Tomato	cytosol	64.67	43.04
Solyc04g025490.1.1	Tomato	cytosol	26.63	40.5
Solyc09g066030.1.1	Tomato	nucleus	78.53	39.97
Solyc07g026560.1.1	Tomato	cytosol	48.64	37.84
Solyc11g011940.1.1	Tomato	nucleus	67.39	34.59
Solyc05g015030.1.1	Tomato	cytosol	43.21	33.54
Solyc07g037910.1.1	Tomato	cytosol	18.48	32.23
Solyc04g025480.1.1	Tomato	cytosol	56.52	31.76
CDY62389	Canola	cytosol	36.68	27.61
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	50.82	26.75
CDY69499	Canola	cytosol	21.47	25.99
Os06t0207966-00	Rice	plastid	16.3	22.81
KRH36827	Soybean	nucleus	40.22	20.87
VIT_04s0079g00480.t01	Wine grape	nucleus	40.22	20.73
KRH11810	Soybean	nucleus	39.67	20.48
GSMUA_Achr10P...	Banana	nucleus	39.4	20.39
AT3G03260.1	Thale cress	nucleus	38.59	20.31
TraesCS6D01G304300.1	Wheat	nucleus	37.5	20.15
TraesCS6A01G324500.1	Wheat	nucleus	37.5	20.15
GSMUA_Achr10P...	Banana	nucleus	37.23	20.09
GSMUA_Achr7P11310_001	Banana	nucleus	39.67	19.84
TraesCS6B01G354900.3	Wheat	nucleus	37.5	19.8
Solyc03g098200.2.1	Tomato	nucleus	38.32	19.56
Zm00001d018225_P001	Maize	nucleus	36.41	19.36
AT1G34650.1	Thale cress	nucleus	37.23	19.35
Bra023611.1-P	Field mustard	nucleus	36.96	19.29
CDX85461	Canola	cytosol	36.96	19.29
Solyc03g031760.2.1	Tomato	cytosol	32.88	19.24
Zm00001d044973_P001	Maize	nucleus	35.87	19.16
Zm00001d052133_P001	Maize	nucleus	36.14	19.05
EER89393	Sorghum	nucleus	36.14	19.0
Bra008562.1-P	Field mustard	cytosol, nucleus, plastid	37.23	18.95
Bra003213.1-P	Field mustard	nucleus	36.41	18.87
CDY53691	Canola	nucleus	36.41	18.87
Solyc06g072310.2.1	Tomato	nucleus	36.68	18.83
GSMUA_Achr2P15140_001	Banana	nucleus	37.5	18.67
EES05874	Sorghum	nucleus	35.87	18.67
Zm00001d037140_P004	Maize	nucleus	34.78	18.63
KRH36826	Soybean	nucleus	35.87	18.51
Bra032003.1-P	Field mustard	nucleus	34.51	18.43
CDY02713	Canola	nucleus	36.96	18.4
AT5G17320.1	Thale cress	nucleus	35.87	18.38
CDY43137	Canola	nucleus	34.24	18.29
GSMUA_Achr6P05990_001	Banana	nucleus	29.89	18.24
Solyc10g006420.2.1	Tomato	cytosol	26.09	18.22
CDY42301	Canola	nucleus	33.7	17.97
Bra020066.1-P	Field mustard	nucleus	33.15	17.89
Bra021363.1-P	Field mustard	nucleus	35.33	17.88
CDY67945	Canola	nucleus	33.42	17.85
KRH42429	Soybean	cytosol	35.33	17.81
CDY49937	Canola	nucleus	32.88	17.44
CDY21211	Canola	nucleus	32.88	17.44
Solyc10g005330.2.1	Tomato	nucleus	33.15	17.13
TraesCS7A01G167900.1	Wheat	nucleus	32.88	16.69
CDY16938	Canola	nucleus	29.89	16.67
TraesCS7D01G168700.1	Wheat	nucleus	33.15	16.67
KRH42428	Soybean	nucleus	34.24	16.64
TraesCS7B01G072700.1	Wheat	nucleus	32.88	16.58
CDY44946	Canola	nucleus	28.8	16.36
Solyc06g050160.2.1	Tomato	nucleus	28.8	16.23
Solyc02g080260.2.1	Tomato	nucleus	32.88	16.11
Solyc01g091630.2.1	Tomato	nucleus	35.6	15.96
Solyc07g041850.1.1	Tomato	nucleus	29.08	15.74
Solyc12g005830.1.1	Tomato	nucleus	31.25	15.31
Solyc06g035940.2.1	Tomato	nucleus	27.99	15.24
Solyc03g120620.2.1	Tomato	nucleus	30.98	14.71
Solyc08g076370.2.1	Tomato	nucleus	32.88	14.37
Solyc03g026070.2.1	Tomato	nucleus	28.8	13.14
Solyc04g025740.1.1	Tomato	nucleus	0.54	1.35
Os06t0208100-00	Rice	nucleus	0.27	0.78
Solyc07g026570.1.1	Tomato	nucleus	0.27	0.71

Protein Annotations

EnsemblPlants:Solyc09g060140.2.1	EnsemblPlantsGene:Solyc09g060140.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0008289	InterPro:IPR002913
InterPro:START_lipid-bd_dom	PANTHER:PTHR24326	PANTHER:PTHR24326:SF504	PFAM:PF01852	PFscan:PS50848	SMART:SM00234
SUPFAM:SSF55961	UniParc:UPI000276B954	UniProt:K4CTU7	MapMan:15.5.3.3	:	:

Description

No Description!

Coordinates

chr9:-:57826540..57833016

Molecular Weight (calculated)

41709.4 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.076

Length

368 amino acids

Sequence
(BLAST)

001: MLCILKIGSA SLFLKSIHYV RIRWKLTTSP VETYHSNIMD FELEQVKWMN LFPTIVTKAK TIEVLDSGTW GGSMQLMYEK LHILSPLVEA REFLFIRGCR
101: QLDATTWIMV DISYDIFNDI QSGEPYYSLK FPSGCAIQDM GNGQSKVTWV EHVQVYEKYQ VNHIFRDLLC DREAYGAKRW IVTLQMMCER FNFQMGSTYH
201: NRHDSKGDVF SFFNDYKTRN QWDILTGGNN VIELDRVLTG TFPGKNITII QEMLVLEETS IDEMRAFLVY ASIDLRAINS IVNGGDATKV PILPSGIIIS
301: PDGRLSSNRD STANAQNGSI LTVTFQIMIC GNNNPTSRQQ KMEVVGSVNG VLSATILRIK EALGCSDL

Best Arabidopsis Sequence Match ( AT1G17920.1 )
(BLAST)

001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA

Arabidopsis Description

HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.