Factsheet for Solyc10g005330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029291	Potato	nucleus	94.24	96.27
VIT_10s0116g00680.t01	Wine grape	nucleus	81.18	79.61
Solyc03g031760.2.1	Tomato	cytosol	70.22	79.49
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	70.37	75.91
Solyc02g080260.2.1	Tomato	nucleus	77.11	73.1
Os04t0627000-02	Rice	cytosol, peroxisome	59.55	72.35
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	71.35	69.97
EES11464	Sorghum	nucleus	74.44	67.17
GSMUA_Achr10P...	Banana	nucleus	67.42	67.13
EES13460	Sorghum	mitochondrion, nucleus	72.19	65.81
TraesCS2B01G497500.1	Wheat	nucleus	70.93	65.16
GSMUA_Achr11P...	Banana	plastid	72.19	65.15
TraesCS2D01G473700.1	Wheat	nucleus	70.93	65.08
TraesCS2A01G474000.1	Wheat	nucleus	70.93	64.99
Zm00001d049443_P005	Maize	nucleus	72.47	64.82
Zm00001d002234_P003	Maize	nucleus	72.05	64.61
Os08t0136100-01	Rice	nucleus	71.07	64.46
Zm00001d026351_P003	Maize	nucleus	73.74	62.2
Zm00001d000247_P001	Maize	plasma membrane	62.08	61.47
TraesCS7A01G308400.1	Wheat	nucleus	67.98	60.8
TraesCS7D01G305200.1	Wheat	nucleus	67.84	60.68
TraesCS7B01G208600.1	Wheat	nucleus	67.98	60.65
Zm00001d024701_P001	Maize	nucleus	67.84	60.6
EES14500	Sorghum	nucleus	68.54	59.95
Solyc12g005830.1.1	Tomato	nucleus	54.78	51.93
Solyc01g091630.2.1	Tomato	nucleus	56.18	48.72
Solyc03g098200.2.1	Tomato	nucleus	48.31	47.71
Solyc06g072310.2.1	Tomato	nucleus	47.33	47.0
Solyc07g041850.1.1	Tomato	nucleus	44.1	46.18
Os08t0187500-01	Rice	nucleus	20.08	43.87
Solyc03g026070.2.1	Tomato	nucleus	45.51	40.15
Solyc03g120620.2.1	Tomato	nucleus	42.98	39.48
Solyc08g076370.2.1	Tomato	nucleus	44.94	38.0
Solyc10g006420.2.1	Tomato	cytosol	27.95	37.76
Solyc06g035940.2.1	Tomato	nucleus	35.25	37.13
Solyc06g050160.2.1	Tomato	nucleus	32.44	35.38
Solyc11g022410.1.1	Tomato	extracellular	3.65	35.14
Solyc09g066070.2.1	Tomato	cytosol	21.07	34.8
Solyc07g026570.1.1	Tomato	nucleus	6.88	34.75
Solyc04g025740.1.1	Tomato	nucleus	7.16	34.46
Solyc10g018030.1.1	Tomato	cytosol	19.52	33.66
Solyc09g057530.1.1	Tomato	cytosol	6.46	33.58
Solyc09g060140.2.1	Tomato	mitochondrion	17.13	33.15
Solyc04g025490.1.1	Tomato	cytosol	11.24	33.06
Solyc10g018000.1.1	Tomato	cytosol, endoplasmic reticulum, nucleus	32.3	32.9
Solyc09g060170.1.1	Tomato	cytosol	15.87	32.85
Solyc09g057540.2.1	Tomato	cytosol	22.75	32.6
Solyc11g011940.1.1	Tomato	nucleus	32.58	32.36
Solyc09g060130.1.1	Tomato	cytosol	19.94	31.98
Solyc09g066030.1.1	Tomato	nucleus	32.3	31.81
Solyc08g062510.2.1	Tomato	nucleus	29.07	31.7
Solyc10g018020.1.1	Tomato	extracellular	14.75	31.25
Solyc07g026560.1.1	Tomato	cytosol	20.65	31.08
Solyc05g015030.1.1	Tomato	cytosol	20.65	31.01
Solyc09g066050.2.1	Tomato	cytosol	24.02	30.92
Solyc11g022420.1.1	Tomato	cytosol	20.79	30.9
Solyc11g022430.1.1	Tomato	cytosol	7.58	30.17
Solyc04g025480.1.1	Tomato	cytosol	27.39	29.77
Solyc07g037910.1.1	Tomato	cytosol	8.71	29.38
Solyc08g062520.2.1	Tomato	cytosol	20.22	28.18

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008289	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
UniProt:K4CX66	PFAM:PF00046	PFAM:PF01852	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF349	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	EnsemblPlantsGene:Solyc10g005330.2	EnsemblPlants:Solyc10g005330.2.1	UniParc:UPI000276C758	:	:

Description

No Description!

Coordinates

chr10:-:239692..245015

Molecular Weight (calculated)

78694.4 Da

IEP (calculated)

5.360

GRAVY (calculated)

-0.344

Length

712 amino acids

Sequence
(BLAST)

001: MFQHNMFDSH NFLLDMTRKT PENELDLIRD DEFETKSGAD IMEGGASGDD QDPNKRPKKK QYHRHTQHQI QELESFFKEC PHPDDKQRKD LGKRLGLEPL
101: QVKFWFQNKR TQMKSQHERH ENTQLRNEND KLRAENIRYK EALTTATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR ISGIAAKYVG KPMLNYPQLP
201: SLGGNILGEM FTTTTSAGDL LRSISGPTDA DKPIVIELAV AAMEELIRLA QTDEPLWMNQ NSDNNDLILN EEEYARTFPR GIGPKSLGLK SEASRESAVV
301: IIDYLHLVEI LMDVSQWTNF FTGIVSKSTI LEVLSTGVAG NYNGALQVMT AEFQVPSPLV PTRENYFVRY CKQHGDGTWA VVDVSLENLR STSVSRCRRR
401: PSGCVIQELP NGYSKVTWIE HVEVDDRAVN NIYRPLVDSG LAFGAKRWVA TLERQCERLA SVMASNIPTG DVITSPEGRK SMLKLAERMV MSFCAGVGAS
501: TAHTWTTLSG SGADDVRVMT RKSIDDPGRP PGIVLSAATS FWMPVPTKRV FDFLRDENSR NEWDILSNGG LVQEMAHIAN GRDSGNSVSL LRVNSGNSSQ
601: NNMLILQESC LDITGSYVIY APVDIAAMNV VLSGGDPDYV ALLPSGFAIL PDGSSNAENS NIAGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV
701: ERIKASITCE NA

Best Arabidopsis Sequence Match ( AT4G21750.2 )
(BLAST)

001: MYHPNMFESH HHMFDMTPKN SENDLGITGS HEEDFETKSG AEVTMENPLE EELQDPNQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRELS
101: LEPLQVKFWF QNKRTQMKAQ HERHENQILK SENDKLRAEN NRYKDALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLMAN
201: SSSFPQLSSS HHIPSRSLDL EVGNFGNNNN SHTGFVGEMF GSSDILRSVS IPSEADKPMI VELAVAAMEE LVRMAQTGDP LWVSSDNSVE ILNEEEYFRT
301: FPRGIGPKPI GLRSEASRES TVVIMNHINL IEILMDVNQW SSVFCGIVSR ALTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRENYF VRYCKQHSDG
401: IWAVVDVSLD SLRPSPITRS RRRPSGCLIQ ELQNGYSKVT WVEHIEVDDR SVHNMYKPLV NTGLAFGAKR WVATLDRQCE RLASSMASNI PACDLSVITS
501: PEGRKSMLKL AERMVMSFCT GVGASTAHAW TTLSTTGSDD VRVMTRKSMD DPGRPPGIVL SAATSFWIPV APKRVFDFLR DENSRSEWDI LSNGGLVQEM
601: AHIANGRDPG NSVSLLRVNS GNSGQSNMLI LQESCTDASG SYVIYAPVDI IAMNVVLSGG DPDYVALLPS GFAILPDGSA RGGGGSANAS AGAGVEGGGE
701: GNNLEVVTTT GSCGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKAALACD GA

Arabidopsis Description

ATML1ATML1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.