Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G497500.1 | Wheat | nucleus | 99.48 | 99.61 |
| TraesCS2A01G474000.1 | Wheat | nucleus | 99.61 | 99.49 |
| HORVU2Hr1G106970.2 | Barley | nucleus, plastid | 98.97 | 98.84 |
| Os04t0627000-02 | Rice | cytosol, peroxisome | 62.5 | 82.76 |
| EES11464 | Sorghum | nucleus | 83.38 | 82.0 |
| Zm00001d002234_P003 | Maize | nucleus | 81.19 | 79.35 |
| GSMUA_Achr3P23090_001 | Banana | endoplasmic reticulum, plasma membrane | 65.98 | 77.58 |
| GSMUA_Achr8P07310_001 | Banana | mitochondrion, nucleus | 71.52 | 76.45 |
| Zm00001d026351_P003 | Maize | nucleus | 82.6 | 75.95 |
| VIT_10s0116g00680.t01 | Wine grape | nucleus | 69.07 | 73.83 |
| PGSC0003DMT400061859 | Potato | nucleus | 65.21 | 73.44 |
| VIT_12s0059g02310.t01 | Wine grape | nucleus | 71.13 | 72.92 |
| GSMUA_Achr10P... | Banana | nucleus | 66.37 | 72.03 |
| Solyc03g031760.2.1 | Tomato | cytosol | 58.38 | 72.02 |
| KRH13175 | Soybean | cytosol | 16.37 | 71.75 |
| Bra000807.1-P | Field mustard | nucleus | 55.03 | 71.52 |
| CDX90879 | Canola | nucleus | 65.85 | 71.37 |
| KRH56105 | Soybean | nucleus | 67.01 | 71.33 |
| CDY21319 | Canola | nucleus | 65.72 | 71.23 |
| PGSC0003DMT400029291 | Potato | nucleus | 63.92 | 71.16 |
| GSMUA_Achr11P... | Banana | plastid | 72.16 | 70.98 |
| Solyc10g005330.2.1 | Tomato | nucleus | 65.08 | 70.93 |
| CDY27417 | Canola | nucleus | 64.82 | 70.45 |
| KRH25398 | Soybean | plastid | 69.07 | 70.43 |
| CDX98703 | Canola | nucleus | 62.89 | 70.22 |
| CDX94054 | Canola | nucleus | 62.76 | 70.07 |
| CDX76399 | Canola | nucleus | 64.43 | 69.93 |
| CDY16639 | Canola | nucleus | 65.98 | 69.85 |
| CDX94586 | Canola | nucleus | 65.72 | 69.67 |
| CDY06167 | Canola | nucleus | 64.56 | 69.58 |
| Bra032478.1-P | Field mustard | nucleus | 64.43 | 69.54 |
| AT1G05230.5 | Thale cress | nucleus | 64.56 | 69.49 |
| Bra029527.1-P | Field mustard | nucleus | 66.37 | 69.13 |
| KRH27601 | Soybean | nucleus | 65.21 | 69.13 |
| KRH22554 | Soybean | nucleus | 69.46 | 69.01 |
| AT4G04890.1 | Thale cress | nucleus | 65.98 | 68.91 |
| Bra015401.1-P | Field mustard | nucleus | 63.92 | 68.89 |
| KRH26803 | Soybean | nucleus | 69.33 | 68.89 |
| KRH77881 | Soybean | nucleus | 64.69 | 68.67 |
| PGSC0003DMT400005277 | Potato | nucleus | 64.69 | 68.49 |
| AT4G21750.3 | Thale cress | nucleus | 66.75 | 67.98 |
| TraesCS7D01G305200.1 | Wheat | nucleus | 69.59 | 67.84 |
| CDY66622 | Canola | nucleus | 63.79 | 67.72 |
| CDY10041 | Canola | nucleus | 64.69 | 67.2 |
| Bra038757.1-P | Field mustard | nucleus | 62.76 | 67.17 |
| Solyc02g080260.2.1 | Tomato | nucleus | 64.95 | 67.11 |
| CDX79091 | Canola | nucleus | 64.3 | 66.89 |
| Bra020872.1-P | Field mustard | nucleus | 64.05 | 66.44 |
| Bra013556.1-P | Field mustard | nucleus | 57.99 | 65.22 |
| CDY49515 | Canola | plasma membrane | 64.69 | 61.9 |
| CDY71572 | Canola | nucleus | 31.06 | 61.32 |
| CDY23096 | Canola | nucleus | 10.31 | 60.61 |
| CDY46842 | Canola | nucleus | 64.56 | 60.36 |
| KRG91238 | Soybean | nucleus | 54.25 | 57.59 |
| KRH35579 | Soybean | nucleus | 54.12 | 53.98 |
| TraesCS6D01G237000.1 | Wheat | nucleus | 49.23 | 47.51 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 41.11 | 46.57 |
| VIT_19s0177g00240.t01 | Wine grape | cytosol, mitochondrion | 13.92 | 45.57 |
| TraesCS5D01G320600.1 | Wheat | nucleus | 47.29 | 43.23 |
| TraesCS7D01G169000.1 | Wheat | nucleus | 7.99 | 41.61 |
| TraesCS2D01G398600.1 | Wheat | nucleus | 41.75 | 41.33 |
| TraesCS7D01G168700.1 | Wheat | nucleus | 38.92 | 41.26 |
| TraesCS7D01G168900.1 | Wheat | nucleus | 7.6 | 39.6 |
| PGSC0003DMT400037397 | Potato | cytosol | 24.1 | 38.09 |
| KRH22254 | Soybean | cytosol | 26.16 | 37.94 |
| TraesCS1D01G197300.1 | Wheat | nucleus | 42.27 | 37.15 |
| Solyc10g006420.2.1 | Tomato | cytosol | 24.61 | 36.24 |
| KRH27078 | Soybean | extracellular, golgi, peroxisome | 14.82 | 34.85 |
| TraesCS3D01G296500.3 | Wheat | nucleus | 33.89 | 33.12 |
| TraesCS3D01G319200.1 | Wheat | nucleus | 28.22 | 32.06 |
| TraesCS4D01G228800.1 | Wheat | nucleus | 8.63 | 31.31 |
| TraesCS1D01G037100.1 | Wheat | nucleus | 8.38 | 30.52 |
| TraesCS5D01G335900.1 | Wheat | nucleus | 28.61 | 29.48 |
| TraesCS3D01G121500.1 | Wheat | nucleus | 8.38 | 29.15 |
| TraesCS3D01G121300.1 | Wheat | nucleus | 7.73 | 28.85 |
| TraesCS4D01G082600.1 | Wheat | nucleus | 28.09 | 27.08 |
| TraesCS7D01G217200.1 | Wheat | nucleus | 7.47 | 26.01 |
| TraesCS3D01G121400.1 | Wheat | golgi, nucleus | 8.25 | 16.49 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR002913 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS50848 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF349 | SMART:SM00234 | SMART:SM00389 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START_lipid-bd_dom | EnsemblPlantsGene:TraesCS2D01G473700 | EnsemblPlants:TraesCS2D01G473700.1 | TIGR:cd00086 | TIGR:cd08875 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:577152396..577158953
Molecular Weight (calculated)
83443.1 Da
IEP (calculated)
5.736
GRAVY (calculated)
-0.223
Length
776 amino acids
Sequence
(BLAST)
(BLAST)
001: MMIPARHMPS SMIGRSSGGA PYGSSSALSL GQPNLLDGSN QHLLPHHLLE QIPARAAESG DNNGSVGGGV GMIRGRDSMD PLGDEFESRS GSENVDGDAV
101: DNAEQEQDPN QRPRKKRYHR HTQHQIQEME AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK NQHERHENSQ LRADNDKLRA ENMRYKEALS
201: SASCPNCGGP AALGEMSFDE HHLRVENARL RDEIDRISAI AAKYVGKPMV PFPVLSSPLA AAPGASAYDV FAGAASVLQA PPDDKQQGVV VELAVAAMEE
301: LLRMARLDDP LWATTVDQAL ALDEEEYARM FIDPRGGLGP KQYGLVSEAS RDAAVVIMTP ASLVEILMDV NQYAAVFSSI VSRAATLEVL STGVAGCYDG
401: ALQVMSVEFQ VPSPLVPTRE SYFVRYCKRN ADGAWAVVDV SLDGLQGVKC RRRPSGCLIQ EAPNGYSKVT WVEHVEVDDR SVHNIYKPLV GSGLAFGARR
501: WVGVLGRQCE RLASAMASNI PTSDIGVITS SEGRKSMLKL AERMVASFCG GVTASVAHQW TTLSGSGAED VRVMTRKSVD DPGRPPGIVL NAATSFWLPV
601: PPKRVFDFLR DETSRSEWDI LSNGGIVQEM AHIANGRDHG NCVSLLRVNS TNSNQSNMLI LQESCTDASG SYVIYAPVDV VAMNVVLNGG DPDYVALLPS
701: GFAILPDGPA GTMHAAAGAT GTGGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIACTVE RIKTAVISNG GASPPQ
101: DNAEQEQDPN QRPRKKRYHR HTQHQIQEME AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK NQHERHENSQ LRADNDKLRA ENMRYKEALS
201: SASCPNCGGP AALGEMSFDE HHLRVENARL RDEIDRISAI AAKYVGKPMV PFPVLSSPLA AAPGASAYDV FAGAASVLQA PPDDKQQGVV VELAVAAMEE
301: LLRMARLDDP LWATTVDQAL ALDEEEYARM FIDPRGGLGP KQYGLVSEAS RDAAVVIMTP ASLVEILMDV NQYAAVFSSI VSRAATLEVL STGVAGCYDG
401: ALQVMSVEFQ VPSPLVPTRE SYFVRYCKRN ADGAWAVVDV SLDGLQGVKC RRRPSGCLIQ EAPNGYSKVT WVEHVEVDDR SVHNIYKPLV GSGLAFGARR
501: WVGVLGRQCE RLASAMASNI PTSDIGVITS SEGRKSMLKL AERMVASFCG GVTASVAHQW TTLSGSGAED VRVMTRKSVD DPGRPPGIVL NAATSFWLPV
601: PPKRVFDFLR DETSRSEWDI LSNGGIVQEM AHIANGRDHG NCVSLLRVNS TNSNQSNMLI LQESCTDASG SYVIYAPVDV VAMNVVLNGG DPDYVALLPS
701: GFAILPDGPA GTMHAAAGAT GTGGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIACTVE RIKTAVISNG GASPPQ
001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA
Arabidopsis Description
PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.