Factsheet for GSMUA_Achr10P04900_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	68.39	74.09
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	72.59	71.49
VIT_10s0116g00680.t01	Wine grape	nucleus	71.33	70.25
PGSC0003DMT400061859	Potato	nucleus	66.99	69.52
KRH56105	Soybean	nucleus	70.49	69.14
VIT_12s0059g02310.t01	Wine grape	nucleus	73.15	69.09
Os04t0627000-02	Rice	cytosol, peroxisome	56.5	68.94
PGSC0003DMT400029291	Potato	nucleus	66.85	68.58
KRH13175	Soybean	cytosol	16.78	67.8
KRH25398	Soybean	plastid	71.89	67.54
Bra000807.1-P	Field mustard	nucleus	56.36	67.5
Solyc10g005330.2.1	Tomato	nucleus	67.13	67.42
Solyc03g031760.2.1	Tomato	cytosol	59.3	67.41
Bra015401.1-P	Field mustard	nucleus	67.41	66.94
AT1G05230.5	Thale cress	nucleus	67.27	66.71
CDY06167	Canola	nucleus	67.13	66.67
EES11464	Sorghum	nucleus	73.57	66.67
Bra032478.1-P	Field mustard	nucleus	66.99	66.62
CDX90879	Canola	nucleus	66.71	66.62
GSMUA_Achr11P...	Banana	plastid	73.43	66.54
TraesCS2B01G497500.1	Wheat	nucleus	72.03	66.45
TraesCS2D01G473700.1	Wheat	nucleus	72.03	66.37
CDY21319	Canola	nucleus	66.43	66.34
HORVU2Hr1G106970.2	Barley	nucleus, plastid	72.03	66.28
TraesCS2A01G474000.1	Wheat	nucleus	72.03	66.28
KRH26803	Soybean	nucleus	71.61	65.56
PGSC0003DMT400005277	Potato	nucleus	67.13	65.48
CDY16639	Canola	nucleus	66.99	65.35
KRH22554	Soybean	nucleus	71.33	65.3
CDX94586	Canola	nucleus	66.85	65.3
CDX94054	Canola	nucleus	63.36	65.18
CDX98703	Canola	nucleus	63.36	65.18
CDY27417	Canola	nucleus	65.03	65.13
AT4G04890.1	Thale cress	nucleus	67.27	64.74
CDY10041	Canola	nucleus	67.55	64.66
KRH27601	Soybean	nucleus	66.15	64.62
KRH77881	Soybean	nucleus	66.01	64.57
CDX76399	Canola	nucleus	64.48	64.48
Bra029527.1-P	Field mustard	nucleus	67.13	64.43
Zm00001d002234_P003	Maize	nucleus	71.19	64.11
EES13460	Sorghum	mitochondrion, nucleus	69.93	64.02
CDY66622	Canola	nucleus	65.03	63.61
Solyc02g080260.2.1	Tomato	nucleus	66.71	63.52
Zm00001d049443_P005	Maize	nucleus	70.07	62.94
Os08t0136100-01	Rice	nucleus	68.81	62.68
AT4G21750.3	Thale cress	nucleus	66.57	62.47
Zm00001d026351_P003	Maize	nucleus	73.57	62.32
Bra038757.1-P	Field mustard	nucleus	63.08	62.21
CDX79091	Canola	nucleus	64.62	61.93
Bra020872.1-P	Field mustard	nucleus	64.48	61.63
TraesCS7D01G305200.1	Wheat	nucleus	67.13	60.3
TraesCS7A01G308400.1	Wheat	nucleus	67.13	60.3
TraesCS7B01G208600.1	Wheat	nucleus	67.13	60.15
HORVU7Hr1G073440.1	Barley	nucleus	66.85	60.05
CDY49515	Canola	plasma membrane	67.55	59.56
Bra013556.1-P	Field mustard	nucleus	57.2	59.28
EES14500	Sorghum	nucleus	67.41	59.21
Zm00001d024701_P001	Maize	nucleus	65.87	59.1
CDY23096	Canola	nucleus	10.91	59.09
Zm00001d000247_P001	Maize	plasma membrane	59.3	58.97
CDY46842	Canola	nucleus	67.55	58.19
HORVU7Hr1G073450.1	Barley	mitochondrion, nucleus	64.48	57.91
CDY71572	Canola	nucleus	31.75	57.76
KRG91238	Soybean	nucleus	55.66	54.45
GSMUA_Achr7P00210_001	Banana	nucleus	50.07	52.72
KRH35579	Soybean	nucleus	55.8	51.29
GSMUA_Achr11P...	Banana	nucleus	49.93	47.98
GSMUA_Achr1P18760_001	Banana	nucleus	49.37	46.69
GSMUA_Achr5P10510_001	Banana	nucleus	51.89	46.67
GSMUA_AchrUn_...	Banana	nucleus	49.37	45.9
VIT_19s0177g00240.t01	Wine grape	cytosol, mitochondrion	15.1	45.57
GSMUA_Achr11P...	Banana	nucleus	49.23	45.36
GSMUA_Achr5P20050_001	Banana	nucleus	50.21	45.16
Os08t0187500-01	Rice	nucleus	20.56	45.09
GSMUA_Achr10P...	Banana	nucleus	44.62	44.87
GSMUA_Achr3P12410_001	Banana	nucleus	46.15	44.47
GSMUA_Achr6P05990_001	Banana	nucleus	37.2	44.11
GSMUA_Achr7P11310_001	Banana	nucleus	43.64	42.39
GSMUA_Achr2P15140_001	Banana	nucleus	43.78	42.35
GSMUA_Achr10P...	Banana	nucleus	39.58	41.5
GSMUA_Achr5P14100_001	Banana	nucleus	41.96	39.68
GSMUA_Achr4P19010_001	Banana	nucleus	42.8	38.2
GSMUA_Achr3P15400_001	Banana	nucleus	39.72	37.92
GSMUA_Achr8P27340_001	Banana	nucleus	38.32	36.58
PGSC0003DMT400037397	Potato	cytosol	25.04	36.46
KRH22254	Soybean	cytosol	27.13	36.26
Solyc10g006420.2.1	Tomato	cytosol	26.01	35.29
KRH27078	Soybean	extracellular, golgi, peroxisome	15.38	33.33

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr10G04900_001	EnsemblPlants:GSMUA_Achr10P04900_001	EnsemblPlants:GSMUA_Achr10T04900_001	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	UniProt:M0RFG7
PFAM:PF00046	PFAM:PF01852	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS50848	PANTHER:PTHR24326
PANTHER:PTHR24326:SF349	SMART:SM00234	SMART:SM00389	SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf
InterPro:START_lipid-bd_dom	UniParc:UPI000294D825	:	:	:	:

Description

Homeobox-leucine zipper protein ROC2 [Source:GMGC_GENE;Acc:GSMUA_Achr10G04900_001]

Coordinates

chr10:+:14541037..14544729

Molecular Weight (calculated)

79371.9 Da

IEP (calculated)

6.304

GRAVY (calculated)

-0.314

Length

715 amino acids

Sequence
(BLAST)

001: MIPATHVASM IGMNRSAEYQ SSAALSLGQE PPFQYQHQHQ LVEIPQTAVA EIEMPTVRDD EFETKSFGDN IENASEDDRD GNQRPRKKQY HRHTQHQIQE
101: LEAFFKECPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ TKNHQERHEN SRLRAENEKL RAENLRYKEA LSNASCPNCG GPSSLGEMSF DEHQLRIDNS
201: RLREEYVGKP VVPHQLFSPM AESDMLGAGD LLGSMFGHRE IEKPVVIELA VVAMEELTRM ARLSEPLWTM KHGDSFEILS EDEYVRNFPR GIGPKPLGMK
301: SEATRQTAAV IMNRVNLVEM LMDVNQWSNV FSGIVSKAIT LERTRMKLLI LNSQMTAEFQ VPSPLVPTRE ILFVRYCKHQ ADGSWAVVDV SLDTLRPPLV
401: ARCRRRPSGC LIQEMPNGYS KVTWVEHAEV DDGSVHDIYK PLVNSGLAFG ATRWIGSLDR QCERLASLMA SNVPSGDITV ITTAEGRKCM LRLAERMVTS
501: FCGGVSASTA HQWTTVSGNG AEDVRVMTRK SVGDPGRPPG IVLNAAKSFW LPVPPKRVFD FLRDERSRNE WDILSNGGGV QEMAHIANGR DHGNCVSLLR
601: VNSVKSSQSN MLILQESCTD PVVSYVIYAP VDVVAMNVVL NGGDPDYVAL LPSGFAILPD GASAAQGSLV TVAFEILVDS VPTAKISLGS VATVNSLIAC
701: TVERIKAALV GENVA

Best Arabidopsis Sequence Match ( AT1G05230.8 )
(BLAST)

001: MFEPNMLLAA MNNADSNNHN YNHEDNNNEG FLRDDEFDSP NTKSGSENQE GGSGNDQDPL HPNKKKRYHR HTQLQIQEME AFFKECPHPD DKQRKQLSRE
101: LNLEPLQVKF WFQNKRTQMK NHHERHENSH LRAENEKLRN DNLRYREALA NASCPNCGGP TAIGEMSFDE HQLRLENARL REEIDRISAI AAKYVGKPVS
201: NYPLMSPPPL PPRPLELAMG NIGGEAYGNN PNDLLKSITA PTESDKPVII DLSVAAMEEL MRMVQVDEPL WKSLVLDEEE YARTFPRGIG PRPAGYRSEA
301: SRESAVVIMN HVNIVEILMD VNQWSTIFAG MVSRAMTLAV LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ETYFARYCKQ QGDGSWAVVD ISLDSLQPNP
401: PARCRRRASG CLIQELPNGY SKVTWVEHVE VDDRGVHNLY KHMVSTGHAF GAKRWVAILD RQCERLASVM ATNISSGEVG VITNQEGRRS MLKLAERMVI
501: SFCAGVSAST AHTWTTLSGT GAEDVRVMTR KSVDDPGRPP GIVLSAATSF WIPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL
601: RVNSANSSQS NMLILQESCT DPTASFVIYA PVDIVAMNIV LNGGDPDYVA LLPSGFAILP DGNANSGAPG GDGGSLLTVA FQILVDSVPT AKLSLGSVAT
701: VNNLIACTVE RIKASMSCET A

Arabidopsis Description

HDG2AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.