Factsheet for AT4G04890.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90879	Canola	nucleus	91.12	94.55
CDY21319	Canola	nucleus	90.98	94.41
CDY16639	Canola	nucleus	93.0	94.27
Bra029527.1-P	Field mustard	nucleus	94.35	94.09
CDX94586	Canola	nucleus	92.6	93.99
Bra000807.1-P	Field mustard	nucleus	73.35	91.29
AT4G21750.3	Thale cress	nucleus	89.77	87.53
GSMUA_Achr3P23090_001	Banana	endoplasmic reticulum, plasma membrane	69.31	78.03
KRH27601	Soybean	nucleus	76.58	77.73
KRH77881	Soybean	nucleus	76.04	77.29
Os04t0627000-02	Rice	cytosol, peroxisome	60.43	76.62
AT1G05230.5	Thale cress	nucleus	71.06	73.23
GSMUA_Achr8P07310_001	Banana	mitochondrion, nucleus	69.85	71.49
EES11464	Sorghum	nucleus	72.27	68.06
EES13460	Sorghum	mitochondrion, nucleus	70.93	67.48
GSMUA_Achr10P...	Banana	nucleus	64.74	67.27
Zm00001d049443_P005	Maize	nucleus	71.2	66.46
TraesCS2D01G473700.1	Wheat	nucleus	68.91	65.98
TraesCS2B01G497500.1	Wheat	nucleus	68.64	65.81
TraesCS2A01G474000.1	Wheat	nucleus	68.64	65.64
GSMUA_Achr11P...	Banana	plastid	69.18	65.15
Zm00001d002234_P003	Maize	nucleus	69.58	65.11
Os08t0136100-01	Rice	nucleus	68.64	64.97
Zm00001d026351_P003	Maize	nucleus	71.87	63.27
Zm00001d000247_P001	Maize	plasma membrane	60.83	62.87
TraesCS7A01G308400.1	Wheat	nucleus	66.49	62.06
TraesCS7D01G305200.1	Wheat	nucleus	66.35	61.93
TraesCS7B01G208600.1	Wheat	nucleus	66.35	61.78
Zm00001d024701_P001	Maize	nucleus	65.95	61.48
EES14500	Sorghum	nucleus	67.29	61.43
AT4G00730.1	Thale cress	nucleus	52.36	48.5
AT5G52170.2	Thale cress	nucleus	44.68	48.33
AT1G17920.1	Thale cress	nucleus	44.41	48.03
AT2G32370.1	Thale cress	nucleus	46.43	47.59
AT1G73360.1	Thale cress	nucleus	45.63	46.95
AT3G61150.1	Thale cress	nucleus	51.01	46.91
Os08t0187500-01	Rice	nucleus	18.98	43.25
AT4G17710.1	Thale cress	nucleus	37.55	39.35
AT3G03260.1	Thale cress	nucleus	36.47	38.77
AT5G46880.3	Thale cress	nucleus	42.4	38.14
AT1G79840.2	Thale cress	nucleus, plastid	39.57	37.89
AT4G25530.1	Thale cress	nucleus	34.05	36.88
AT5G17320.1	Thale cress	nucleus	33.24	34.4
AT1G34650.1	Thale cress	nucleus	31.63	33.19
AT5G07260.1	Thale cress	cytosol	21.13	29.02
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	15.21	24.51

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	EntrezGene:825828	ProteinID:AAD17342.1	ProteinID:AEE82438.1
EMBL:AF424560	ProteinID:ANM67658.1	ArrayExpress:AT4G04890	EnsemblPlantsGene:AT4G04890	RefSeq:AT4G04890	TAIR:AT4G04890
RefSeq:AT4G04890-TAIR-G	EnsemblPlants:AT4G04890.1	TAIR:AT4G04890.1	EMBL:AY062575	Unigene:At.4047	ProteinID:BAB58961.1
EMBL:BT000144	ProteinID:CAB81031.1	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008289	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791
GO:GO:0009845	GO:GO:0009913	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0048825
InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393
RefSeq:NP_001329475.1	RefSeq:NP_567274.1	Symbol:PDF2	PFAM:PF00046	PFAM:PF01852	PO:PO:0000013
PO:PO:0000017	PO:PO:0000037	PO:PO:0000229	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001180	PO:PO:0001185	PO:PO:0004507	PO:PO:0006210
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009020	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF320	UniProt:Q93V99	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI00000AC650	SEG:seg

Description

PDF2Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93V99]

Coordinates

chr4:-:2476390..2482447

Molecular Weight (calculated)

81534.7 Da

IEP (calculated)

5.758

GRAVY (calculated)

-0.337

Length

743 amino acids

Sequence
(BLAST)

001: MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN
101: LEPLQVKFWF QNKRTQMKAQ SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE EIDRISAIAA KYVGKPLGSS
201: FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301: LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL
401: DSLRPSTPIL RTRRRPSGCL IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS NIPGDLSVIT SPEGRKSMLK
501: LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601: GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF
701: QILVDSVPTA KLSLGSVATV NSLIKCTVER IKAAVSCDVG GGA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.