Factsheet for AT1G17920.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96744	Canola	nucleus	83.99	85.74
CDY26204	Canola	nucleus	79.48	85.71
CDY19185	Canola	nucleus	84.42	85.04
Bra016578.1-P	Field mustard	nucleus	83.7	84.06
CDX83884	Canola	nucleus	83.26	83.5
Bra025938.1-P	Field mustard	nucleus	83.99	83.14
CDY26205	Canola	nucleus	83.41	83.04
CDY42097	Canola	nucleus	61.86	82.2
Os06t0208100-00	Rice	nucleus	13.83	73.64
AT1G73360.1	Thale cress	nucleus	74.53	70.91
KRH09477	Soybean	nucleus	67.25	64.35
VIT_17s0053g00780.t01	Wine grape	nucleus	66.38	64.23
KRH38939	Soybean	nucleus	66.67	63.43
Solyc03g098200.2.1	Tomato	nucleus	63.32	60.33
PGSC0003DMT400069312	Potato	nucleus	62.15	59.72
KRH60596	Soybean	nucleus	61.86	59.61
Solyc06g072310.2.1	Tomato	nucleus	61.72	59.14
KRH41898	Soybean	nucleus	61.43	58.53
GSMUA_Achr10P...	Banana	nucleus	57.93	55.98
TraesCS6D01G304300.1	Wheat	nucleus	54.88	55.04
TraesCS6A01G324500.1	Wheat	nucleus	54.59	54.74
GSMUA_Achr6P05990_001	Banana	nucleus	48.03	54.73
Zm00001d018225_P001	Maize	nucleus	54.73	54.34
TraesCS6B01G354900.3	Wheat	nucleus	54.73	53.95
EES05874	Sorghum	nucleus	55.46	53.89
Zm00001d052133_P001	Maize	nucleus	54.73	53.87
Os06t0207966-00	Rice	plastid	20.38	53.23
GSMUA_Achr2P15140_001	Banana	nucleus	57.06	53.04
Zm00001d037140_P004	Maize	nucleus	52.84	52.84
Zm00001d044973_P001	Maize	nucleus	52.98	52.83
GSMUA_Achr7P11310_001	Banana	nucleus	56.33	52.58
EER89393	Sorghum	nucleus	52.69	51.71
GSMUA_Achr10P...	Banana	nucleus	50.51	50.88
TraesCS7A01G167900.1	Wheat	nucleus	48.47	45.93
TraesCS7D01G168700.1	Wheat	nucleus	48.47	45.49
TraesCS7B01G072700.1	Wheat	nucleus	48.33	45.48
AT4G04890.1	Thale cress	nucleus	48.03	44.41
AT1G05230.5	Thale cress	nucleus	45.85	43.69
AT4G21750.3	Thale cress	nucleus	48.33	43.57
AT5G52170.2	Thale cress	nucleus	40.03	40.03
AT4G00730.1	Thale cress	nucleus	46.29	39.65
AT3G61150.1	Thale cress	nucleus	44.69	37.99
AT3G03260.1	Thale cress	nucleus	38.43	37.77
AT4G17710.1	Thale cress	nucleus	37.41	36.25
AT2G32370.1	Thale cress	nucleus	38.14	36.14
AT5G17320.1	Thale cress	nucleus	37.41	35.79
AT5G46880.3	Thale cress	nucleus	42.79	35.59
AT1G34650.1	Thale cress	nucleus	36.54	35.45
AT1G79840.2	Thale cress	nucleus, plastid	35.81	31.7
AT4G25530.1	Thale cress	nucleus	31.59	31.63
AT5G07260.1	Thale cress	cytosol	21.54	27.36
TraesCSU01G150000.1	Wheat	nucleus	8.3	26.15
AT4G26920.1	Thale cress	cytosol, plasma membrane, plastid	16.16	24.08
TraesCSU01G244000.1	Wheat	nucleus	6.84	22.82

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.3	Gene3D:3.30.530.20	EntrezGene:838371	ProteinID:AAF97271.1	EMBL:AB493465
ProteinID:AEE29652.1	EMBL:AF424554	ProteinID:ANM61017.1	ArrayExpress:AT1G17920	EnsemblPlantsGene:AT1G17920	RefSeq:AT1G17920
TAIR:AT1G17920	RefSeq:AT1G17920-TAIR-G	EnsemblPlants:AT1G17920.1	TAIR:AT1G17920.1	EMBL:BT001050	UniProt:C0SUW2
ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010091
GO:GO:0016043	GO:GO:0030154	GO:GO:0043565	GO:GO:0048497	Symbol:HDG12	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR002913	InterPro:IPR023393	RefSeq:NP_001323262.1
RefSeq:NP_564041.2	PFAM:PF00046	PFAM:PF01852	PO:PO:0000013	PO:PO:0000017	PO:PO:0000027
PO:PO:0000037	PO:PO:0000230	PO:PO:0000282	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007103	PO:PO:0007115
PO:PO:0007131	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009001	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020003	PO:PO:0020020
PO:PO:0020041	PO:PO:0020148	PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00027	PFscan:PS50071
PFscan:PS50848	PANTHER:PTHR24326	PANTHER:PTHR24326:SF490	UniProt:Q9LMT8	SMART:SM00234	SMART:SM00389
SUPFAM:SSF46689	SUPFAM:SSF55961	InterPro:START-like_dom_sf	InterPro:START_lipid-bd_dom	UniParc:UPI00000A03FF	SEG:seg

Description

HDG12Uncharacterized protein At1g17920 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUW2]

Coordinates

chr1:-:6161870..6165820

Molecular Weight (calculated)

76531.3 Da

IEP (calculated)

6.702

GRAVY (calculated)

-0.326

Length

687 amino acids

Sequence
(BLAST)

001: MEFLGDSQNH DSSETEKKNK KKKRFHRHTP HQIQRLESTF NECQHPDEKQ RNQLSRELGL APRQIKFWFQ NRRTQKKAQH ERADNCALKE ENDKIRCENI
101: AIREAIKHAI CPSCGDSPVN EDSYFDEQKL RIENAQLRDE LERVSSIAAK FLGRPISHLP PLLNPMHVSP LELFHTGPSL DFDLLPGSCS SMSVPSLPSQ
201: PNLVLSEMDK SLMTNIAVTA MEELLRLLQT NEPLWIKTDG CRDVLNLENY ENMFTRSSTS GGKKNNLGME ASRSSGVVFT NAITLVDMLM NSVKLTELFP
301: SIVASSKTLA VISSGLRGNH GDALHLMIEE LQVLSPLVTT REFCVLRYCQ QIEHGTWAIV NVSYEFPQFI SQSRSYRFPS GCLIQDMSNG YSKVTWVEHG
401: EFEEQEPIHE MFKDIVHKGL AFGAERWIAT LQRMCERFTN LLEPATSSLD LGGVIPSPEG KRSIMRLAHR MVSNFCLSVG TSNNTRSTVV SGLDEFGIRV
501: TSHKSRHEPN GMVLCAATSF WLPISPQNVF NFLKDERTRP QWDVLSNGNS VQEVAHITNG SNPGNCISVL RGFNASSSQN NMLILQESCI DSSSAALVIY
601: TPVDLPALNI AMSGQDTSYI PILPSGFAIS PDGSSKGGGS LITVGFQIMV SGLQPAKLNM ESMETVNNLI NTTVHQIKTT LNCPSTA

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.