Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73360.1 | KXG38837 | AT4G17710.1 | 21798944 |
| AT1G73360.1 | EES09292 | AT5G38420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052133_P001 | Maize | nucleus | 94.48 | 95.7 |
| Zm00001d018225_P001 | Maize | nucleus | 92.93 | 94.94 |
| TraesCS6A01G324500.1 | Wheat | nucleus | 84.3 | 87.01 |
| TraesCS6D01G304300.1 | Wheat | nucleus | 84.3 | 87.01 |
| TraesCS6B01G354900.3 | Wheat | nucleus | 84.3 | 85.51 |
| HORVU6Hr1G079410.6 | Barley | nucleus | 84.87 | 82.76 |
| EER89393 | Sorghum | nucleus | 77.23 | 78.0 |
| GSMUA_Achr10P... | Banana | nucleus | 65.77 | 65.4 |
| KRH09477 | Soybean | nucleus | 65.35 | 64.35 |
| KRH38939 | Soybean | nucleus | 65.63 | 64.27 |
| VIT_17s0053g00780.t01 | Wine grape | nucleus | 63.93 | 63.66 |
| GSMUA_Achr2P15140_001 | Banana | nucleus | 65.77 | 62.92 |
| GSMUA_Achr7P11310_001 | Banana | nucleus | 65.06 | 62.5 |
| GSMUA_Achr6P05990_001 | Banana | nucleus | 53.04 | 62.19 |
| KRH60596 | Soybean | nucleus | 61.1 | 60.59 |
| KRH41898 | Soybean | nucleus | 61.24 | 60.06 |
| Solyc03g098200.2.1 | Tomato | nucleus | 60.68 | 59.5 |
| GSMUA_Achr10P... | Banana | nucleus | 57.28 | 59.38 |
| PGSC0003DMT400069312 | Potato | nucleus | 59.69 | 59.02 |
| Solyc06g072310.2.1 | Tomato | nucleus | 59.12 | 58.3 |
| CDX96744 | Canola | nucleus | 53.61 | 56.31 |
| AT1G17920.1 | Thale cress | nucleus | 53.89 | 55.46 |
| Bra016578.1-P | Field mustard | nucleus | 53.47 | 55.26 |
| CDX83884 | Canola | nucleus | 53.18 | 54.89 |
| AT1G73360.1 | Thale cress | nucleus | 55.87 | 54.71 |
| CDX68229 | Canola | nucleus | 53.89 | 54.2 |
| CDY19185 | Canola | nucleus | 51.77 | 53.67 |
| Bra025938.1-P | Field mustard | nucleus | 52.62 | 53.6 |
| CDY26204 | Canola | nucleus | 48.23 | 53.53 |
| CDY26205 | Canola | nucleus | 52.19 | 53.48 |
| Bra003846.1-P | Field mustard | nucleus | 53.32 | 53.48 |
| CDX96471 | Canola | nucleus | 54.03 | 53.2 |
| Bra015996.1-P | Field mustard | nucleus | 53.75 | 53.0 |
| CDX72984 | Canola | nucleus | 53.47 | 52.87 |
| CDY11109 | Canola | nucleus | 53.04 | 52.82 |
| CDY42097 | Canola | nucleus | 38.47 | 52.61 |
| VIT_04s0079g00480.t01 | Wine grape | nucleus | 51.49 | 50.98 |
| EES13460 | Sorghum | mitochondrion, nucleus | 48.8 | 44.17 |
| EES11464 | Sorghum | nucleus | 48.37 | 43.35 |
| Solyc09g057530.1.1 | Tomato | cytosol | 8.35 | 43.07 |
| KRH36827 | Soybean | nucleus | 43.0 | 42.88 |
| KRH11810 | Soybean | nucleus | 43.14 | 42.78 |
| EES02604 | Sorghum | nucleus | 48.8 | 42.33 |
| EES14500 | Sorghum | nucleus | 47.67 | 41.4 |
| KXG26935 | Sorghum | nucleus | 46.82 | 41.27 |
| AT3G03260.1 | Thale cress | nucleus | 40.03 | 40.49 |
| CDX85461 | Canola | cytosol | 38.9 | 39.01 |
| Bra023611.1-P | Field mustard | nucleus | 38.76 | 38.87 |
| Bra032003.1-P | Field mustard | nucleus | 37.62 | 38.61 |
| CDY43137 | Canola | nucleus | 37.34 | 38.32 |
| AT5G17320.1 | Thale cress | nucleus | 38.9 | 38.3 |
| CDY53691 | Canola | nucleus | 38.33 | 38.17 |
| AT1G34650.1 | Thale cress | nucleus | 38.19 | 38.14 |
| CDY42301 | Canola | nucleus | 37.2 | 38.12 |
| CDY62389 | Canola | cytosol | 26.31 | 38.04 |
| Bra003213.1-P | Field mustard | nucleus | 38.19 | 38.03 |
| KRH36826 | Soybean | nucleus | 38.33 | 38.01 |
| EER99222 | Sorghum | nucleus | 46.82 | 37.96 |
| CDY67945 | Canola | nucleus | 36.92 | 37.88 |
| Bra020066.1-P | Field mustard | nucleus | 36.49 | 37.83 |
| Solyc09g066070.2.1 | Tomato | cytosol | 23.06 | 37.82 |
| CDY49937 | Canola | nucleus | 36.78 | 37.46 |
| CDY02713 | Canola | nucleus | 38.61 | 36.94 |
| Bra008562.1-P | Field mustard | cytosol, nucleus, plastid | 37.62 | 36.79 |
| CDY21211 | Canola | nucleus | 36.07 | 36.74 |
| CDY44946 | Canola | nucleus | 33.66 | 36.73 |
| Bra021363.1-P | Field mustard | nucleus | 37.62 | 36.59 |
| CDY69499 | Canola | cytosol | 15.7 | 36.51 |
| PGSC0003DMT400034503 | Potato | cytosol, nucleus | 34.79 | 36.12 |
| Solyc09g060140.2.1 | Tomato | mitochondrion | 18.67 | 35.87 |
| KXG38837 | Sorghum | nucleus | 44.55 | 35.71 |
| PGSC0003DMT400051268 | Potato | cytosol | 25.18 | 35.67 |
| Solyc11g011940.1.1 | Tomato | nucleus | 36.07 | 35.56 |
| Solyc07g026570.1.1 | Tomato | nucleus | 7.07 | 35.46 |
| PGSC0003DMT400085057 | Potato | cytosol | 23.9 | 35.36 |
| CDY16938 | Canola | nucleus | 32.96 | 35.3 |
| Solyc09g060170.1.1 | Tomato | cytosol | 17.11 | 35.17 |
| Solyc10g018030.1.1 | Tomato | cytosol | 20.51 | 35.11 |
| Solyc10g018020.1.1 | Tomato | extracellular | 16.55 | 34.82 |
| Solyc08g062510.2.1 | Tomato | nucleus | 31.97 | 34.61 |
| KRH42428 | Soybean | nucleus | 36.92 | 34.48 |
| Solyc09g060130.1.1 | Tomato | cytosol | 21.5 | 34.23 |
| Solyc09g066030.1.1 | Tomato | nucleus | 34.79 | 34.02 |
| PGSC0003DMT400038820 | Potato | extracellular | 17.4 | 33.79 |
| Solyc09g057540.2.1 | Tomato | cytosol | 23.62 | 33.6 |
| Solyc05g015030.1.1 | Tomato | cytosol | 22.49 | 33.54 |
| Solyc09g066050.2.1 | Tomato | cytosol | 26.17 | 33.45 |
| PGSC0003DMT400051266 | Potato | cytosol | 18.25 | 33.16 |
| Solyc04g025490.1.1 | Tomato | cytosol | 11.17 | 32.64 |
| Solyc10g018000.1.1 | Tomato | cytosol, endoplasmic reticulum, nucleus | 31.82 | 32.19 |
| Solyc11g022420.1.1 | Tomato | cytosol | 21.64 | 31.94 |
| Solyc08g062520.2.1 | Tomato | cytosol | 22.77 | 31.51 |
| Solyc07g026560.1.1 | Tomato | cytosol | 20.93 | 31.29 |
| PGSC0003DMT400036411 | Potato | nucleus | 23.2 | 31.24 |
| OQU87592 | Sorghum | nucleus | 31.26 | 31.08 |
| KRH42429 | Soybean | cytosol | 31.54 | 30.55 |
| EER98409 | Sorghum | nucleus | 31.12 | 30.14 |
| Solyc04g025480.1.1 | Tomato | cytosol | 27.86 | 30.08 |
| OQU81266 | Sorghum | nucleus | 31.12 | 28.61 |
| OQU81174 | Sorghum | nucleus | 29.56 | 28.32 |
| TraesCSU01G150000.1 | Wheat | nucleus | 8.63 | 27.98 |
| Solyc07g037910.1.1 | Tomato | cytosol | 8.2 | 27.49 |
| EES01587 | Sorghum | nucleus | 27.3 | 25.39 |
| TraesCSU01G244000.1 | Wheat | nucleus | 7.21 | 24.76 |
| Bra007562.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 9.9 | 24.48 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.3 | Gene3D:3.30.530.20 | EntrezGene:8075216 | UniProt:C5XTH9 | ncoils:Coil |
| EnsemblPlants:EES05874 | ProteinID:EES05874 | ProteinID:EES05874.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR002913 |
| InterPro:IPR023393 | PFAM:PF00046 | PFAM:PF01852 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS50848 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF490 | SMART:SM00234 | SMART:SM00389 | EnsemblPlantsGene:SORBI_3004G313900 | SUPFAM:SSF46689 |
| SUPFAM:SSF55961 | InterPro:START-like_dom_sf | InterPro:START_lipid-bd_dom | UniParc:UPI0001A859E5 | RefSeq:XP_002452898.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr4:+:65043028..65048460
Molecular Weight (calculated)
77074.4 Da
IEP (calculated)
6.586
GRAVY (calculated)
-0.181
Length
707 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFGDDVMDG GSDAQRRKKR YHRHTPRQIQ QLEAMFKECP HPDENQRMQL SRELGLEPRQ IKFWFQNRRT QMKAQHERQD NCFLRAENDK IRCENIAMRE
101: ALRTVICHTC GGPPVTDDYF DEQKLRMENA RLKEELDRVS SLTSKYLGRP ITQLPPVQPL SMSSSLDLSV GGLGSPALGP SLDLDLLSGG SSGYPPFHLP
201: MTVSEMERPM MAEMATRAMD ELIRMAQAGE HLWVKTAGGG PDGREVLNVD TYDSIFAKPG GSFRGPDVHV EGSRDSGLVF MSAIGLVDMF MDSSKFTEFF
301: PAIVSKARTM DVLVNGMAGR SDSLVLMYEE LHMMSPVVPT REFCFLRYCR QIEHGLWAIA DISVDLQQRD ARFGAPPSRS CRLPSGCLIA DMADGSSKVT
401: WVEHMEIEDR VPIHLLYRDL ILSGAAFGAH RWLAALQRAC ERCACLATAG MPHRDIAAAG VTPEGKRSMM KLSQRMVSSF CASLSASQLH RWTTLSGPND
501: VGVRVMVHRS TDPGQPSGVV LSAATSIWLP VPCDRVFAFV RDEHTRSQWD VLSHGNPVQE VSRIPNGSHP GNCISLLRGL NASQNSMLIL QESCTDASGS
601: LVVYAPIDIP AANVVMSGED PSAIPLLPSG FTILPDGRPG ASSSSSSAAG GTLGATAAAG SLVTVAFQIL VSSLPSSKLN AESVATVNSL ISTTVEQIKA
701: ALNCASH
101: ALRTVICHTC GGPPVTDDYF DEQKLRMENA RLKEELDRVS SLTSKYLGRP ITQLPPVQPL SMSSSLDLSV GGLGSPALGP SLDLDLLSGG SSGYPPFHLP
201: MTVSEMERPM MAEMATRAMD ELIRMAQAGE HLWVKTAGGG PDGREVLNVD TYDSIFAKPG GSFRGPDVHV EGSRDSGLVF MSAIGLVDMF MDSSKFTEFF
301: PAIVSKARTM DVLVNGMAGR SDSLVLMYEE LHMMSPVVPT REFCFLRYCR QIEHGLWAIA DISVDLQQRD ARFGAPPSRS CRLPSGCLIA DMADGSSKVT
401: WVEHMEIEDR VPIHLLYRDL ILSGAAFGAH RWLAALQRAC ERCACLATAG MPHRDIAAAG VTPEGKRSMM KLSQRMVSSF CASLSASQLH RWTTLSGPND
501: VGVRVMVHRS TDPGQPSGVV LSAATSIWLP VPCDRVFAFV RDEHTRSQWD VLSHGNPVQE VSRIPNGSHP GNCISLLRGL NASQNSMLIL QESCTDASGS
601: LVVYAPIDIP AANVVMSGED PSAIPLLPSG FTILPDGRPG ASSSSSSAAG GTLGATAAAG SLVTVAFQIL VSSLPSSKLN AESVATVNSL ISTTVEQIKA
701: ALNCASH
001: MSFVVGVGGS GSGSGGDGGG SHHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
101: AENDKIRCEN IAIREALKHA ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP LDLSMTSLTG CGPFGHGPSL
201: DFDLLPGSSM AVGPNNNLQS QPNLAISDMD KPIMTGIALT AMEELLRLLQ TNEPLWTRTD GCRDILNLGS YENVFPRSSN RGKNQNFRVE ASRSSGIVFM
301: NAMALVDMFM DCVKWTELFP SIIAASKTLA VISSGMGGTH EGALHLLYEE MEVLSPLVAT REFCELRYCQ QTEQGSWIVV NVSYDLPQFV SHSQSYRFPS
401: GCLIQDMPNG YSKVTWVEHI ETEEKELVHE LYREIIHRGI AFGADRWVTT LQRMCERFAS LSVPASSSRD LGGVILSPEG KRSMMRLAQR MISNYCLSVS
501: RSNNTRSTVV SELNEVGIRV TAHKSPEPNG TVLCAATTFW LPNSPQNVFN FLKDERTRPQ WDVLSNGNAV QEVAHISNGS HPGNCISVLR GSNATHSNNM
601: LILQESSTDS SGAFVVYSPV DLAALNIAMS GEDPSYIPLL SSGFTISPDG NGSNSEQGGA STSSGRASAS GSLITVGFQI MVSNLPTAKL NMESVETVNN
701: LIGTTVHQIK TALSGPTAST TA
Arabidopsis Description
HDG11Homeobox-leucine zipper protein HDG11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX31]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.