CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88427
EER90950
EER91090
EER92716
EER95833
EER98873
EES03295
EES05647
EES09234
EES11464
EES13460
EES14500
EES15016
EES16520
KXG22639
KXG25605
KXG29961
OQU84950
OQU88196
OQU90921
OQU91064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38420.1	EER88427	AT1G01440.1	21798944
AT5G38420.1	EES03295	AT1G01440.1	21798944
AT5G38420.1	KXG22639	AT1G01440.1	21798944
AT5G38420.1	KXG29961	AT1G01440.1	21798944
AT5G38420.1	EES09234	AT2G41370.1	21798944
AT5G38420.1	EES16520	AT2G41370.1	21798944
AT5G38420.1	OQU88196	AT2G41370.1	21798944
AT5G38420.1	OQU84950	AT3G04240.1	21798944
AT5G38420.1	EER98873	AT3G17860.1	21798944
AT5G38420.1	EES15016	AT3G17860.1	21798944
AT5G38420.1	EES05647	AT3G27960.1	21798944
AT5G38420.1	EES11464	AT4G04890.1	21798944
AT5G38420.1	EES13460	AT4G04890.1	21798944
AT5G38420.1	EES14500	AT4G04890.1	21798944
AT5G38420.1	EER90950	AT4G08150.1	21798944
AT5G38420.1	EER91090	AT4G08150.1	21798944
AT5G38420.1	EER95833	AT4G08150.1	21798944
AT5G38420.1	OQU90921	AT4G08150.1	21798944
AT5G38420.1	OQU91064	AT4G08150.1	21798944
AT5G38420.1	EER92716	AT5G11980.1	21798944
AT5G38430.1	KXG25605	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004894_P001	Maize	plastid	87.57	87.06
Zm00001d052595_P001	Maize	plastid	87.57	87.06
Os12t0292400-01	Rice	extracellular	78.11	75.43
Os12t0291400-01	Rice	plastid	78.11	75.43
Os12t0274700-01	Rice	plastid	78.11	75.43
Os12t0291100-01	Rice	plastid	77.51	74.86
TraesCS5A01G165700.1	Wheat	plastid	76.92	74.29
TraesCS5D01G169600.2	Wheat	plastid	76.92	74.29
TraesCS5D01G169900.2	Wheat	plastid	76.92	74.29
HORVU5Hr1G038630.1	Barley	plastid	76.92	74.29
HORVU5Hr1G051010.2	Barley	plastid	76.92	74.29
TraesCS5B01G162800.1	Wheat	plastid	76.92	74.29
TraesCS5B01G162600.1	Wheat	plastid	76.92	74.29
TraesCS5A01G165400.2	Wheat	plastid	76.92	74.29
HORVU5Hr1G033540.2	Barley	plastid	76.33	73.71
TraesCS2D01G065300.1	Wheat	plastid	75.74	73.56
TraesCS2A01G066700.1	Wheat	plastid	75.74	73.56
TraesCS2B01G079100.1	Wheat	plastid	75.74	73.56
TraesCS2B01G079300.1	Wheat	plastid	75.74	73.56
TraesCS2D01G065200.1	Wheat	plastid	75.74	73.14
HORVU2Hr1G010690.1	Barley	plastid	75.74	73.14
TraesCS2B01G079200.1	Wheat	plastid	75.74	73.14
HORVU2Hr1G010630.1	Barley	plastid	75.74	73.14
TraesCS2D01G065100.2	Wheat	plastid	75.15	72.99
TraesCS2A01G067200.1	Wheat	plastid	75.15	72.57
TraesCS2A01G066800.1	Wheat	plastid	75.15	72.57
TraesCS2A01G067300.1	Wheat	plastid	75.15	72.57
TraesCS2B01G079400.1	Wheat	plastid	75.15	72.57
TraesCS2D01G065600.1	Wheat	plastid	75.15	72.57
HORVU1Hr1G035720.2	Barley	plastid	75.15	72.16
TraesCS2D01G065500.1	Wheat	plastid	70.41	72.12
TraesCS2A01G067100.1	Wheat	plastid	74.56	72.0
TraesCS2D01G065400.1	Wheat	plastid	74.56	72.0
TraesCS2A01G067000.1	Wheat	plastid	73.37	70.86
GSMUA_Achr8P18400_001	Banana	cytosol	10.65	69.23
TraesCS2B01G078900.2	Wheat	plastid	75.15	68.65
HORVU2Hr1G010670.1	Barley	plastid	75.74	67.37
GSMUA_Achr6P09710_001	Banana	plastid	62.72	67.09
TraesCS2A01G066900.1	Wheat	plastid	75.74	66.67
PGSC0003DMT400067905	Potato	plastid	62.13	66.04
TraesCS2B01G079500.1	Wheat	plastid	75.15	65.8
GSMUA_Achr10P...	Banana	plasma membrane	60.95	65.19
GSMUA_Achr2P22730_001	Banana	unclear	60.35	64.56
PGSC0003DMT400032975	Potato	mitochondrion, plastid	66.27	62.22
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	66.27	61.88
Bra028181.1-P	Field mustard	plastid	58.58	61.11
KRG93867	Soybean	plastid	63.91	60.67
KRH18247	Soybean	nucleus, plastid	63.91	60.67
KRG93871	Soybean	plastid	63.91	60.67
Solyc03g034220.2.1	Tomato	plastid	64.5	60.56
Solyc02g085950.2.1	Tomato	extracellular	64.5	60.56
HORVU5Hr1G050990.4	Barley	plastid	68.05	59.9
Solyc02g063150.2.1	Tomato	nucleus, plastid	63.91	59.67
PGSC0003DMT400062138	Potato	cytosol, plastid	63.91	59.67
Os12t0291200-00	Rice	plastid	33.14	58.33
VIT_17s0000g03690.t01	Wine grape	plastid	62.13	58.33
Bra028174.1-P	Field mustard	plastid	62.13	58.01
CDY71122	Canola	plastid	62.13	58.01
CDY52468	Canola	plastid	62.13	58.01
CDY01665	Canola	plastid	62.13	58.01
Bra025431.1-P	Field mustard	plastid	62.13	58.01
CDY67657	Canola	plastid	61.54	57.46
CDX67402	Canola	plastid	61.54	57.46
CDX74525	Canola	plastid	61.54	57.46
CDX74532	Canola	plastid	61.54	57.46
CDY01671	Canola	plastid	61.54	57.46
AT1G67090.1	Thale cress	plastid	60.95	57.22
Bra028406.1-P	Field mustard	plastid	60.95	56.91
AT5G38430.1	Thale cress	plastid	60.95	56.91
Bra034027.1-P	Field mustard	plastid	60.35	56.35
Bra034029.1-P	Field mustard	plastid	60.35	56.35
AT5G38420.1	Thale cress	plastid	60.35	56.35
CDY12613	Canola	plastid	60.35	56.35
Bra034024.1-P	Field mustard	plastid	59.76	55.8
CDY42338	Canola	plastid	59.76	55.8
AT5G38410.3	Thale cress	plastid	60.95	55.38
CDY12616	Canola	plastid	59.17	55.25
CDX99682	Canola	plastid	61.54	55.03
CDY42337	Canola	plastid	57.4	53.59
KRG93872	Soybean	plastid	42.6	53.33
CDY12612	Canola	cytosol	37.28	52.07
CDY42341	Canola	plastid	56.8	51.61
KRG93873	Soybean	plastid	31.95	51.43
KRH46925	Soybean	plastid	27.22	51.11
KRH01757	Soybean	plastid	42.01	47.33
KRG99965	Soybean	plastid	35.5	45.8
HORVU7Hr1G048050.2	Barley	plastid	23.08	44.32
KRG99964	Soybean	plastid	26.04	44.0
KRH15458	Soybean	plastid	33.73	35.85

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	EntrezGene:8070647	UniProt:C5Y519
EnsemblPlants:EES09292	ProteinID:EES09292	ProteinID:EES09292.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979
GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0055114	InterPro:IPR036385	PFAM:PF00101
PFAM:PF12338	PRINTS:PR00152	PANTHER:PTHR31262	MetaCyc:PWY-5532	MetaCyc:PWY-5723	InterPro:RuBisCO_sc
InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961	EnsemblPlantsGene:SORBI_3005G042000	SUPFAM:SSF55239
unigene:Sbi.17768	UniParc:UPI0001A868DC	RefSeq:XP_002450304.1	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:3876057..3877378

Molecular Weight (calculated)

19059.8 Da

IEP (calculated)

8.672

GRAVY (calculated)

-0.244

Length

169 amino acids

Sequence
(BLAST)

001: MAPTVMASSA TAVAPFQGLK STATLPVARR STTSLAKVSN GGRIRCMQVW PAYGNKKFET LSYLPPLTEE QLLKQVDYLL RNNWVPCLEF SKEGFVYREN
101: STSPCYYDGR YWTMWKLPMF GCTDASQVYK ELQEAIASYP DAYVRILGFD NIKQTQCVSF IAYKPAGSE

Best Arabidopsis Sequence Match ( AT1G67090.1 )
(BLAST)

001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG

Arabidopsis Description

RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.