CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016506_P003	Maize	cytosol	96.14	92.31
HORVU2Hr1G067320.4	Barley	cytosol	80.71	85.18
TraesCS2A01G275800.1	Wheat	cytosol	81.6	83.67
TraesCS2D01G274800.1	Wheat	endoplasmic reticulum	81.5	83.57
Os02t0489550-00	Rice	endoplasmic reticulum, golgi	54.01	83.49
TraesCS2B01G293500.1	Wheat	cytosol	81.31	83.37
VIT_14s0036g00890.t01	Wine grape	cytosol	12.07	81.33
GSMUA_Achr3P17280_001	Banana	cytosol	77.25	77.94
VIT_04s0043g00760.t01	Wine grape	cytosol	75.96	77.89
Zm00001d015678_P001	Maize	extracellular	11.67	77.63
KRG92600	Soybean	cytosol	75.77	77.53
KRH34180	Soybean	cytosol	75.57	77.33
PGSC0003DMT400040741	Potato	cytosol	74.28	76.71
Solyc09g097830.2.1	Tomato	cytosol	73.79	75.74
CDY21133	Canola	cytosol, mitochondrion	72.3	74.97
Bra040144.1-P	Field mustard	cytosol, mitochondrion	72.21	74.87
AT3G04240.1	Thale cress	cytosol	72.3	74.82
CDY29989	Canola	cytosol	72.11	74.69
KRH38067	Soybean	cytosol	5.34	67.5
Zm00001d050343_P001	Maize	cytosol	13.16	60.45
Zm00001d003691_P002	Maize	cytosol	9.4	44.19
EES14080	Sorghum	cytosol	22.95	25.36
EER95134	Sorghum	mitochondrion	8.21	9.85

Protein Annotations

KEGG:00514+2.4.1.255	Gene3D:1.25.40.10	MapMan:18.1.2.2.2	Gene3D:3.40.50.11380	Gene3D:3.40.50.2000	EntrezGene:8056694
UniProt:C5XRT8	ProteinID:EES06819.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0006493	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0016757	GO:GO:0019538	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
InterPro:OGT/SEC/SPY_C	EnsemblPlants:OQU84950	ProteinID:OQU84950	ProteinID:OQU84950.1	PFAM:PF13181	PFAM:PF13414
PFAM:PF13844	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR44998	SMART:SM00028	EnsemblPlantsGene:SORBI_3004G147500
SUPFAM:SSF48452	unigene:Sbi.10	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001A85A7C
RefSeq:XP_002453843.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:46308281..46323401

Molecular Weight (calculated)

113207.0 Da

IEP (calculated)

6.652

GRAVY (calculated)

-0.228

Length

1011 amino acids

Sequence
(BLAST)

0001: MLSLQQQHGG AVAGGGGGDA RNHAPQPAVL GAGVDWLAFG ARADLEEPAR NAPSPALFLL PPAPLDDRAA QPEPKPKPGQ LAGAVDEERH LALAHQNYRS
0101: GKYREALEHG NVVYEKNARR TDNLLLLGAI YYQIRNYDMC IAKNEEALAI DPQFAECYGN MANAWKEKGD IDLAIRYYLT AIQLRPNFCD AWSNLASAYT
0201: RKGRLNEAAQ CCRQALAINP RLVDAHSNLG NLMKAQGFIQ EAYSCYIEAL RIDPHFAIAW SNLAGLFMEA GDLDKALMYY KEAVKLKPSF ADAYLNQGNV
0301: YKALGMPQDA IMCYQRALQA RPDYAMAYGN LATIYYEQGQ LDMAIRCYNQ AIVYDPQFVE AYNNMGNALK DAGRVEEAIN CYRSCLALQA NHPQALTNLG
0401: NIYMEWSMIS AAASFYKAAI SVTSGLSSPL NNLAVIYKQQ GNYADAITCY TEVLRIDPTA ADALVNRGNT FKEIGRVNEA IQDYVQAATI RPNMAEAHAN
0501: LASAYKDSGH VETAIVSYKQ ALRLRPDFPE ATCNLLHTLQ CVCDWENRDA MFRDVEEIIR RQIKMSVLPS VQPFHAIAYP IDPMLALEIS CKYAAHCSLI
0601: ASRFGLPPFV HPSPVPVKAE GKHCRLRVGY VSSDFGNHPL SHLMGSVFGM HDRANIEVFC YALSQNDGTE WRQRIQSEAE HFVDVSAMTS DNIARLINQD
0701: KIQILINLNG YTKGARNEIF ALQPAPIQVS YMGFPGTTGA AYIDYLVTDE FVSPSRYSHI YSEKLVHLPH CYFVNDYKQK NRDCLTPVCP HKRSDYGLPE
0801: DKFIFACFNQ LYKMDPEIFD TWCNILKRVP NSALWLLRFP AAGETRVRAH AVARGVRSDQ IIFTDVAMKN EHIRRSALAD LFLDTPLCNA HTTGTDILWA
0901: GLPMITLPLE KMATRVAGSL CVATGLGEEM IVSSMKEYED RAVDLALNPV KLQALTNKLK EVRMTCPLFD TARWVRNLER AYYKMWNLYC SSRHPEPFKV
1001: LEDDNEFPFD R

Best Arabidopsis Sequence Match ( AT3G04240.1 )
(BLAST)

001: MISSKNGAAM ISRPVFLSDR VDEVFSRKLD LSVSSSSSSS LLQQFNKTHE GDDDARLALA HQLYKGGDFK QALEHSNMVY QRNPLRTDNL LLIGAIYYQL
101: QEYDMCIARN EEALRIQPQF AECYGNMANA WKEKGDTDRA IRYYLIAIEL RPNFADAWSN LASAYMRKGR LSEATQCCQQ ALSLNPLLVD AHSNLGNLMK
201: AQGLIHEAYS CYLEAVRIQP TFAIAWSNLA GLFMESGDLN RALQYYKEAV KLKPAFPDAY LNLGNVYKAL GRPTEAIMCY QHALQMRPNS AMAFGNIASI
301: YYEQGQLDLA IRHYKQALSR DPRFLEAYNN LGNALKDIGR VDEAVRCYNQ CLALQPNHPQ AMANLGNIYM EWNMMGPASS LFKATLAVTT GLSAPFNNLA
401: IIYKQQGNYS DAISCYNEVL RIDPLAADAL VNRGNTYKEI GRVTEAIQDY MHAINFRPTM AEAHANLASA YKDSGHVEAA ITSYKQALLL RPDFPEATCN
501: LLHTLQCVCC WEDRSKMFAE VESIIRRQIN MSVLPSVQPF HAIAYPIDPI LALEISRKYA AHCSIIASRF GLPPFTHPAG LPVKREGGFK RLRIGYVSSD
601: FGNHPLSHLM GSVFGMHNRE NVEVFCYALS ANDNTEWRQR IQSEAEHFLD VSAMSSDAIA KIINQDKIQI LINLNGYTKG ARNEIFAMQP APIQVSYMGF
701: PGTTGATYID YLVTDEFVSP LQYAHIYSEK LVHLPHCYFV NDYKQKNQDV LDPNSKPKRS DYGLPEDKFI FACFNQLYKM DPEIVNTWCN ILKRVPNSAL
801: WLLRFPAAGE MRFRTYAAAQ GVQPDQIIFT DVAMKSEHIR RSVLADVILD TPLCNGHTTG TDVLWAGVPM ITLPLEKMAT RVAGSLCLAT GLGHGMIVNS
901: LEEYEEKAVS LALNKPKLQA LTKELRASRL TCPLFDTMRW VKNLERSYFK MWNLHCSGQQ PQHFKVLEND LEFPHDR

Arabidopsis Description

SECProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Source:UniProtKB/Swiss-Prot;Acc:Q9M8Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.