CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028533_P001	Maize	mitochondrion	95.14	95.48
Zm00001d047855_P001	Maize	mitochondrion	91.7	91.7
HORVU4Hr1G061170.3	Barley	cytosol, mitochondrion, nucleus	90.87	90.87
Os03t0263900-01	Rice	plasma membrane	90.51	89.98
TraesCS4D01G215500.1	Wheat	mitochondrion	89.68	89.79
TraesCS4A01G089400.1	Wheat	mitochondrion	89.32	89.43
TraesCS4B01G215000.1	Wheat	cytosol, mitochondrion	88.97	89.07
VIT_18s0001g13570.t01	Wine grape	cytosol	65.12	68.71
GSMUA_Achr10P...	Banana	plasma membrane	71.53	67.0
KRH33574	Soybean	cytosol	63.58	66.83
Solyc04g081050.1.1	Tomato	cytosol	63.46	66.71
KRG90336	Soybean	nucleus	63.35	66.58
CDY46833	Canola	cytosol, mitochondrion, nucleus, plastid	63.58	66.34
Bra015393.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	63.7	66.21
AT1G05150.1	Thale cress	cytosol	63.23	65.97
AT2G32450.1	Thale cress	cytosol	62.4	65.59
PGSC0003DMT400009639	Potato	cytosol	61.21	60.71
CDY55452	Canola	cytosol	13.64	51.8
OQU84950	Sorghum	cytosol	9.85	8.21
EES14080	Sorghum	cytosol	8.42	7.76

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.25.40.10	Gene3D:3.30.60.90	MapMan:35.1	EntrezGene:8054293	UniProt:C5WQ60
EnsemblPlants:EER95134	ProteinID:EER95134	ProteinID:EER95134.1	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0008270	InterPro:IPR000433	InterPro:IPR002048
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	PFAM:PF13432	PFAM:PF14559	PFscan:PS50005
PFscan:PS50222	PFscan:PS50293	PANTHER:PTHR45081	SMART:SM00028	SMART:SM00054	SMART:SM00291
EnsemblPlantsGene:SORBI_3001G428000	SUPFAM:SSF47473	SUPFAM:SSF48452	SUPFAM:SSF57850	unigene:Sbi.8359	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001A831B1	RefSeq:XP_002468136.1	InterPro:Znf_ZZ	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:70714090..70717736

Molecular Weight (calculated)

92148.4 Da

IEP (calculated)

6.362

GRAVY (calculated)

-0.270

Length

843 amino acids

Sequence
(BLAST)

001: MALSASAASA GRGSRAEKVR RIFERFDTNG DGGLDRNEMA ALVVAVNPRV KFSEDQISAI LDEVFRTYAE FILPDGRGLS LPGLLRTYDD GAGDVDRDFL
101: ALSLPVVDSD ASSPEIAAGD AAALSSPPSG AAAAASLLDD HAKPLGAGGA LPSVSSRAAA AAPAWATSPN HGIAFDSSWG LLDDLEILVK RLRSKQLRKG
201: SVDGSGGAGN NNFDSFSEAG WSREISGAAD SASTAAPWDE TSRDYLTFVK ELAVLRTRAD ASRSREEAFD NHMVIGRALS EHRLFRDALA SFRRACELQP
301: TDVRPHFRAG NCLYALGRYA EAKEEYLLAL EAAEAGGSQS ADILPQIHVN LGIAMEAEGM VLGACEHYRE AAILCPSHAR ALKLLGSALF GVGEYRAAEK
401: ALEEAIFLKE DYADAHCDLG SALHAVGEDD RAIQEFQTAI DLKPGHVDAL YNLGGLNMDA GRFVRAAEMY TRVLSIRPNH WRAQLNKAVA LLGQGESEEA
501: KKALKEAFKM TQRVEVYDAI SHLKTLQKKK PKPSKGKDDG QGEQAYVVVE ASKFKRVGRK TTLRQDLANA LDIRAFERMT KLGHCDVELL RKEMNETDVP
601: VSYSGTGIPE KSIRKAALEV ILRRLLSFLK PDTFQGAIKA INERILSVLD APGSGRVDLG MFFAIIAPVC SGPVDRRKRI VFDALLWRPA SEGSNGQIRR
701: SDALTYIKLL RAVYIPTHGA SDMLEMHGES DPTMVSYTEF LEMFNDPDWG FGILSTLVKL EESDHIRHGR YTCSICRYPI IGSRFKETKH SFSLCNRCYS
801: EGKVPSAYKL EEYRFKEYGN ESEALIDKCM CFNLHSKKLE SDA

Best Arabidopsis Sequence Match ( AT1G05150.1 )
(BLAST)

001: MATRGSRSEK VKRIFQQFDG NHDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPNKGL TYDGLLRTYD DGAGDVDRDF DALGLELNAD
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT

Arabidopsis Description

Uncharacterized TPR repeat-containing protein At1g05150 [Source:UniProtKB/Swiss-Prot;Acc:O23052]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.