CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015393.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	98.89	98.52
AT1G05150.1	Thale cress	cytosol	90.35	90.35
VIT_18s0001g13570.t01	Wine grape	cytosol	77.23	78.1
KRH33574	Soybean	cytosol	76.73	77.31
KRG90336	Soybean	nucleus	76.61	77.18
Solyc04g081050.1.1	Tomato	cytosol	76.24	76.81
CDY55452	Canola	cytosol	20.3	73.87
PGSC0003DMT400009639	Potato	cytosol	73.27	69.65
Zm00001d028533_P001	Maize	mitochondrion	66.34	63.81
EER95134	Sorghum	mitochondrion	66.34	63.58
HORVU4Hr1G061170.3	Barley	cytosol, mitochondrion, nucleus	66.34	63.58
TraesCS4D01G215500.1	Wheat	mitochondrion	65.97	63.3
Zm00001d047855_P001	Maize	mitochondrion	65.97	63.23
Os03t0263900-01	Rice	plasma membrane	66.21	63.09
TraesCS4A01G089400.1	Wheat	mitochondrion	65.35	62.71
TraesCS4B01G215000.1	Wheat	cytosol, mitochondrion	65.35	62.71
GSMUA_Achr10P...	Banana	plasma membrane	65.59	58.89
Zm00001d044204_P001	Maize	cytosol, peroxisome, plasma membrane, plastid	30.69	46.01
CDY01033	Canola	cytosol	8.79	7.77
CDY08515	Canola	cytosol	8.66	7.71
CDY21133	Canola	cytosol, mitochondrion	9.03	7.49
CDY29989	Canola	cytosol	9.03	7.48
CDY00739	Canola	cytosol	8.66	6.55
CDX73870	Canola	cytosol	5.94	5.33

Protein Annotations

Gene3D:1.10.238.10	Gene3D:1.25.40.10	MapMan:35.1	GO:A0A078IC72	UniProt:A0A078IC72	EnsemblPlants:CDY46833
ProteinID:CDY46833	ProteinID:CDY46833.1	ncoils:Coil	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802	GO:GO:0005886	GO:GO:0009506
GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00086277001	InterPro:IPR002048	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
PFAM:PF13414	PFAM:PF13432	PFscan:PS50005	PFscan:PS50222	PFscan:PS50293	PANTHER:PTHR45081
SMART:SM00028	SUPFAM:SSF47473	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0004EDC1E8	SEG:seg	:	:	:	:

Description

BnaA10g03170DBnaA10g03170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC72]

Coordinates

chrLK032687:-:15194..18044

Molecular Weight (calculated)

90012.1 Da

IEP (calculated)

7.136

GRAVY (calculated)

-0.425

Length

808 amino acids

Sequence
(BLAST)

001: MATRGSRSEK VKRIFQQFDG NRDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPAKGL TYDGLLRTYD DGAGDVDRDF DALGLELNPE
101: ETIITKGASE ASSSSIADER AVEAQKKQRT AAWAVSPNHG IVFDDTWKLV DDLEILIKRL KSKQEKVNNN SNNNNADAFS DAGWSRELGP STELSDKRIY
201: WEESSHDYNV FVKELGVLRS KADGARSREE AFDGHMAIGR VLYEHQLFKE ALVSFKRACE LQPTDVRPHF KAGNCLYVLG KCKESKEEFL LALEAAESGG
301: NQWAYLLPQI YVNLGISLEG EGMVLSACEY YREAAILCPT HYRALKLLGS ALFGVGEYRA AVKALEEAIY LKPDYADAHC DLGSSLHSMG EDERAIEVFQ
401: RAIDLKPGHV DALYNLGGLY MDLGRFQRAS EMYTRVLAVW PNHWRAQLNK AVSLLGAGET EEAKRALKEA LKLTNRVELH DAVSHLKHLQ KKKKGKKNGS
501: GNGGEGGPFI IVEASKFKTV GEKTTLRPDL ATALQVRAFQ KVTRLGKCDV EGVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLV SLKPETFQGA
601: IKAINERILS VLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFEALLW RPVNEGSSQI TKTDADKYIK LLRAIYIPSH GMSEMLEVHG EEEAGSSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEGNDR NRHGNHVCSV CRYPIIGSRF KEVKARFSLC NQCYSEGKVP PSFKQEEYRF REYGSEAEAM KAKCVCFSGQ
801: SHKKPIAA

Best Arabidopsis Sequence Match ( AT1G05150.1 )
(BLAST)

001: MATRGSRSEK VKRIFQQFDG NHDGGLNREE MAALVVAVNP RVKFSDEQIN AILDEVFRTY AEFIDPNKGL TYDGLLRTYD DGAGDVDRDF DALGLELNAD
101: ETTIKGSEAA SSSSITDERA VEAQKKQRTA AWAVSPNHGI VFDETWKLVD DLEILVKRLK SKQEKDGKLK ADNNNNNVDA FSDAGWSREL GPSSEISEKR
201: IYWEESSHDY GVFVKELGVL RSKADGARSR EEAFDGHMAI GRVLYEHQLF KEALVSFKRA CELQPTDVRP HFKAGNCLYV LGKCKESKDE FLLALEAAES
301: GGNQWAYLLP QIYVNLGIAL EGEGMVLSAC EYYREAAILC PTHFRALKLL GSALFGVGEY RAAVKALEEA IYLKPDYADA HCDLASSLHS MGEDERAIEV
401: FQRAIDLKPG HVDALYNLGG LYMDLGRFQR ASEMYTRVLT VWPNHWRAQL NKAVSLLGAG ETEEAKRALK EALKLTNRVE LHDAISHLKH LQKKKGKNNG
501: NGNGGEGPFI VVEPSKFKTV GEKTTLRPDL ATALQIRAFQ RVTRLGKCDV EAVRKEMRDN DVPVSYSGSG GPTKSIRKPN LEEILRRLLS SLKPDTFQGA
601: IKAINEKILA LLDDSGSGRV DMGMFYAVIA PLCGGHSDKR KRVAFDALLW RPVNEGSSQI TKTDAVKYIK LLRAIYIPSH GMSEMLEVHG EEEAESSVTV
701: TFNQFLAMFD DPDWGFGIMS TILKLEANDR NRHGNQVCSV CRYPVIGSRF KEVKARFSLC NQCYGEGKVP PSFKQEEYKF REYESEAEAM KAKCVCFSMQ
801: SHKKAIAT

Arabidopsis Description

Uncharacterized TPR repeat-containing protein At1g05150 [Source:UniProtKB/Swiss-Prot;Acc:O23052]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.