CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04787
CDY21388

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11540.1	CDY04787	AT1G22770.1	15155885
AT3G11540.1	CDY21388	AT1G22770.1	15155885

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08515	Canola	cytosol	92.12	92.73
AT3G11540.1	Thale cress	cytosol	90.7	90.7
CDX73870	Canola	cytosol	79.54	80.78
VIT_08s0007g02910.t01	Wine grape	cytosol	80.53	80.53
Solyc09g010180.2.1	Tomato	extracellular	76.81	75.4
PGSC0003DMT400023083	Potato	cytosol	76.81	75.4
CDY00739	Canola	cytosol	87.42	74.74
Zm00001d031938_P001	Maize	plastid	74.29	74.53
EES14080	Sorghum	cytosol	74.07	73.99
GSMUA_Achr3P22610_001	Banana	cytosol	74.18	73.86
Os08t0559300-01	Rice	cytosol	73.85	72.82
TraesCS6B01G136300.1	Wheat	cytosol, plastid	73.85	71.96
TraesCS6D01G095600.1	Wheat	cytosol	73.85	71.73
TraesCS6A01G107700.1	Wheat	cytosol	73.74	71.55
KRH38138	Soybean	cytosol	14.55	70.37
HORVU6Hr1G019280.3	Barley	cytosol	74.18	70.04
CDY21133	Canola	cytosol, mitochondrion	24.51	22.97
CDY29989	Canola	cytosol	24.51	22.95
CDY46833	Canola	cytosol, mitochondrion, nucleus, plastid	7.77	8.79
CDY55452	Canola	cytosol	2.08	8.56

Protein Annotations

KEGG:00514+2.4.1.255	Gene3D:1.25.40.10	MapMan:18.1.2.2.1	Gene3D:3.40.50.11380	Gene3D:3.40.50.2000	EnsemblPlants:CDY01033
ProteinID:CDY01033	ProteinID:CDY01033.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00111060001	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:OGT/SEC/SPY_C	PFAM:PF00515
PFAM:PF13374	PFAM:PF13844	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR44835	SMART:SM00028
SMART:SM00671	SUPFAM:SSF48452	InterPro:Sel1-like	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1
InterPro:TPR_repeat	UniPathway:UPA00378	UniParc:UPI0004EBF1E6	SEG:seg	:	:

Description

BnaC05g41670D

Coordinates

chrLK031923:+:801065..806628

Molecular Weight (calculated)

101420.0 Da

IEP (calculated)

6.270

GRAVY (calculated)

-0.221

Length

914 amino acids

Sequence
(BLAST)

001: MVGIEDNTER ERSPVIENGF ANGSLSSPTT DVLSPSPKAT QGNNDTLSYA NILRARNKFA DALALYETML EKDCKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDSALGCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVSQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI HANPTYAEAF
401: NNLGVLYRDA GNITAAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLYEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSG VVKEDAKTFR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPLQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPE CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLSKV GLGHLVAKNE DECVQLSVDL
801: ASDITALSKL RMSLRDLMAG SPVCNGPSFA VALESAYRSM WRKYCKGEVP SLKRMEMLQR KVQEDPSISK ELGSSRLNVT GEATPSLKAN GSAPVPSSLP
901: TQSSQLSKRM DSTS

Best Arabidopsis Sequence Match ( AT3G11540.1 )
(BLAST)

001: MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF
101: SEAIRLDPHN ACALTHCGIL HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK IDPHYAPAYY NLGVVYSEMM
201: QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKLEGDVTQG VAYYKKALYY NWHYADAMYN
301: LGVAYGEMLK FDMAIVFYEL AFHFNPHCAE ACNNLGVLYK DRDNLDKAVE CYQMALSIKP NFAQSLNNLG VVYTVQGKMD AAASMIEKAI LANPTYAEAF
401: NNLGVLYRDA GNITMAIDAY EECLKIDPDS RNAGQNRLLA MNYINEGLDD KLFEAHRDWG WRFTRLHPQY TSWDNLKDPE RPITIGYISP DFFTHSVSYF
501: IEAPLTHHDY TKYKVVVYSA VVKADAKTYR FRDKVLKKGG VWKDIYGIDE KKIASMVRED KIDILVELTG HTANNKLGTM ACRPAPVQVT WIGYPNTTGL
601: PTVDYRITDS LADPPDTKQK QVEELVRLPD CFLCYTPSPE AGPVCPTPAL SNGFVTFGSF NNLAKITPKV LQVWARILCA VPNSRLVVKC KPFCCDSIRQ
701: RFLTTLEQLG LESKRVDLLP LILFNHDHMQ AYSLMDISLD TFPYAGTTTT CESLYMGVPC VTMAGSVHAH NVGVSLLTKV GLGHLVAKNE DEYVQLSVDL
801: ASDVTALSKL RMSLRDLMAG SPVCNGPSFA VGLESAYRNM WKKYCKGEVP SLRRMEMLQK EVHDDPLISK DLGPSRVSVT GEATPSLKAN GSAPVPSSLP
901: TQSPQLSKRM DSTS

Arabidopsis Description

SPYProbable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Source:UniProtKB/Swiss-Prot;Acc:Q96301]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.